laurahdezlorenzo / graph_geneticsLinks
Phenotype prediction through genotype by means of GNNs
☆13Updated 2 years ago
Alternatives and similar repositories for graph_genetics
Users that are interested in graph_genetics are comparing it to the libraries listed below
Sorting:
- Disease subnetwork detection with explainable Graph Neural Networks☆23Updated last year
- HiGCN: a hierarchical graph convolution network for representation learning of gene expression data☆12Updated 4 years ago
- ☆20Updated 4 years ago
- Similarity network fusion in Python☆84Updated 5 years ago
- MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in…☆167Updated 4 years ago
- End-to-end deep learning model for low dimensional latent space extraction and multi-class classification on multi-omics datasets.☆34Updated 4 years ago
- An explainable multi-omics graph integration method based on graph convolutional networks to predict cancer genes.☆154Updated 3 years ago
- P-NET, Biologically informed deep neural network for prostate cancer classification and discovery☆156Updated 3 years ago
- ☆23Updated 4 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆149Updated last year
- Random Walk with Restart on Multiplex and Heterogeneous Biological Networks☆36Updated 5 years ago
- scPretrain: Multi-task self-supervised learning for cell type classification☆23Updated 3 years ago
- Multi-task deep learning framework for multi-omics data analysis☆47Updated 3 years ago
- Code and dataset for SNP2Vec paper☆21Updated 2 years ago
- ☆42Updated 7 months ago
- Hypergraph Factorisation☆24Updated 8 months ago
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆122Updated 3 years ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆56Updated 4 years ago
- ☆16Updated 4 years ago
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆55Updated 4 years ago
- ☆9Updated 5 years ago
- ☆70Updated last year
- ☆76Updated 3 years ago
- SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases☆69Updated last month
- Experimental evaluation and comparison of multi-omics data integration methods for cancer subtyping☆14Updated 3 years ago
- CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis☆34Updated 2 years ago
- Benchmarks for Graph Machine Learning in Brain Connectomics☆38Updated 6 months ago
- Interpretable convolutional neural networks on multi-omics data predict long-term survival in glioblastoma☆15Updated 2 years ago
- Shared Nearest Neighbor Clustering Algorithm: Implementation and Evaluation☆31Updated 5 years ago
- Multi-omics integration method using AE and GCN☆36Updated 2 years ago