bio-phys / MDBenchmarkLinks
Quickly generate, start and analyze benchmarks for molecular dynamics simulations.
☆80Updated last year
Alternatives and similar repositories for MDBenchmark
Users that are interested in MDBenchmark are comparing it to the libraries listed below
Sorting:
- Physical validation of molecular simulations☆57Updated last month
- LOOS: a lightweight object-oriented structure analysis library☆127Updated 3 months ago
- Sire Molecular Simulations Framework☆96Updated 2 years ago
- Main code repository for FATSLiM☆23Updated 3 years ago
- Reads Gromacs EDR file to populate a pandas dataframe☆33Updated 3 months ago
- A document for the Living Journal of Computational Molecular Science (LiveCoMS) which describes basic training for molecular simulations …☆117Updated 7 years ago
- Best Practices article intended for LiveCoMS☆42Updated 6 years ago
- An open source Python framework for transition interface and path sampling calculations.☆116Updated last month
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆65Updated 2 months ago
- How to analyze molecular dynamics data with PyEMMA☆82Updated 6 years ago
- Bayesian tools for fitting molecular mechanics torsion parameters to quantum chemical data.☆21Updated 4 years ago
- A general small molecule force field descended from AMBER99 and parm@Frosst, available in the SMIRNOFF format☆31Updated last month
- Dihedral scanner with wavefront propagation☆35Updated 9 months ago
- Tinker-HP: High-Performance Massively Parallel Evolution of Tinker on CPUs & GPUs☆100Updated last week
- ☆61Updated 6 months ago
- A stripped-down set of just antechamber, sqm, and tleap.☆33Updated 4 years ago
- a python package for the interfacial analysis of molecular simulations☆94Updated last week
- Fast PBC wrapping and unwrapping for VMD☆24Updated last year
- Software Suite for Advanced General Ensemble Simulations☆90Updated 2 years ago
- A Python toolkit for the analyis of lipid membrane simulations☆32Updated 3 months ago
- Toolkit to aid in the analysis of lipid bilayer molecular simulation trajectories.☆26Updated 4 years ago
- An example of how to write a plugin for OpenMM☆31Updated 2 years ago
- A plugin that allows the use of Tensorflow in Hoomd-Blue for GPU-accelerated ML+MD☆33Updated last year
- A fully GPU-accelerated molecular dynamics program for the Martini force field☆35Updated 2 years ago
- A physical property evaluation toolkit from the Open Forcefield Consortium.☆58Updated last week
- A class for conversion between zmatrices and cartesian coordinates☆34Updated 5 years ago
- Suite of programs to perform non-linear dimensionality reduction -- sketch-map in particular☆48Updated last year
- Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations☆20Updated 7 years ago
- Create coarse grain Martini input files for Gromacs from (atomistic) pdb files.☆40Updated 3 years ago
- A project (and object) for storing, manipulating, and converting molecular mechanics data.☆86Updated last week