bio-phys / MDBenchmarkLinks
Quickly generate, start and analyze benchmarks for molecular dynamics simulations.
☆80Updated last year
Alternatives and similar repositories for MDBenchmark
Users that are interested in MDBenchmark are comparing it to the libraries listed below
Sorting:
- Physical validation of molecular simulations☆57Updated 2 months ago
- Main code repository for FATSLiM☆23Updated 3 years ago
- An open source Python framework for transition interface and path sampling calculations.☆114Updated 6 months ago
- LOOS: a lightweight object-oriented structure analysis library☆125Updated last month
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆64Updated last week
- Best Practices article intended for LiveCoMS☆42Updated 5 years ago
- Sire Molecular Simulations Framework☆96Updated 2 years ago
- A document for the Living Journal of Computational Molecular Science (LiveCoMS) which describes basic training for molecular simulations …☆117Updated 6 years ago
- Quantum Mechanical Bespoke Force Field Derivation Toolkit☆103Updated last year
- Reads Gromacs EDR file to populate a pandas dataframe☆33Updated last month
- Bayesian tools for fitting molecular mechanics torsion parameters to quantum chemical data.☆21Updated 4 years ago
- A physical property evaluation toolkit from the Open Forcefield Consortium.☆57Updated this week
- How to analyze molecular dynamics data with PyEMMA☆81Updated 6 years ago
- A Python toolkit for the analyis of lipid membrane simulations☆33Updated last month
- OpenMM plugin to interface with PLUMED☆71Updated last month
- ASH is a Python-based computational chemistry and QM/MM environment, primarily for molecular calculations in the gas phase, explicit sol…☆94Updated last week
- A project (and object) for storing, manipulating, and converting molecular mechanics data.☆83Updated this week
- A stripped-down set of just antechamber, sqm, and tleap.☆33Updated 4 years ago
- Software Suite for Advanced General Ensemble Simulations☆89Updated 2 years ago
- Toolkit to aid in the analysis of lipid bilayer molecular simulation trajectories.☆26Updated 4 years ago
- Dihedral scanner with wavefront propagation☆35Updated 7 months ago
- Fast PBC wrapping and unwrapping for VMD☆23Updated last year
- Tinker-HP: High-Performance Massively Parallel Evolution of Tinker on CPUs & GPUs☆100Updated 5 months ago
- Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations☆20Updated 7 years ago
- A general small molecule force field descended from AMBER99 and parm@Frosst, available in the SMIRNOFF format☆31Updated last year
- An example of how to write a plugin for OpenMM☆31Updated last year
- ☆61Updated 4 months ago
- A comprehensive tool for analyzing liquid solvation structure.☆54Updated last week
- Suite of programs to perform non-linear dimensionality reduction -- sketch-map in particular☆47Updated last year
- WESTPA: The Weighted Ensemble Simulation Toolkit with Parallelization and Analysis☆208Updated this week