List of papers about Peptide research using Deep Learning
☆44Jun 16, 2026Updated last month
Alternatives and similar repositories for awesome-peptide
Users that are interested in awesome-peptide are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Heuristic energy-based cyclic peptide design☆15Feb 21, 2025Updated last year
- Implementation of CycPeptMP, an accurate and efficient model for predicting the membrane permeability of cyclic peptides☆32May 10, 2025Updated last year
- A foundation model approach to guide antimicrobial peptide design in the era of artificial intelligence driven scientific discovery☆57Sep 1, 2025Updated 10 months ago
- ☆87Jan 23, 2026Updated 6 months ago
- Reinforcement learning based cyclic peptide binder design☆18Jul 22, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Comprehensive Benchmark for Protein-Peptide Complex Structure Prediction with AlphaFold3☆19Sep 4, 2025Updated 10 months ago
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆128Apr 16, 2025Updated last year
- ☆13May 18, 2025Updated last year
- Codes for our paper "UniMoMo: Unified Generative Modeling of 3D Molecules for De Novo Binder Design" (ICML 2025)☆97Dec 7, 2025Updated 7 months ago
- ☆16Oct 27, 2024Updated last year
- A universal structure-directed lead optimization☆76Jan 30, 2026Updated 5 months ago
- Paper collection about de novo peptide Sequening☆24Feb 5, 2025Updated last year
- ☆18Apr 4, 2026Updated 3 months ago
- Designing antimicrobial peptides (AMPs) is awesome.☆36Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- In silico directed evolution of peptide binders with AlphaFold☆274Apr 24, 2026Updated 3 months ago
- Input files and binding free energy values from our benchmark with QuantumBind-RBFE☆16Apr 16, 2025Updated last year
- [ICLR 2025] Hotspot-Driven Peptide Design via Multi-Fragment Autoregressive Extension☆21May 5, 2025Updated last year
- Official repository for DiffPepBuilder and DiffPepDock tools☆127Oct 24, 2025Updated 9 months ago
- ☆15Aug 8, 2025Updated 11 months ago
- Cyclic-peptide - protein complexes benchmark and associated scripts and data☆16Aug 31, 2024Updated last year
- ☆10Feb 18, 2020Updated 6 years ago
- Coarse-grained and Multi-dimensional Data-driven molecular generation (CMD-GEN). This framework bridges three-dimensional ligand-protein …☆18Sep 13, 2025Updated 10 months ago
- Molecular conformer generation using enhanced sampling methods☆21Jul 28, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆109May 25, 2025Updated last year
- Tool to design cyclic peptides that mimic proteins and target their binding partners.☆17Jul 9, 2024Updated 2 years ago
- ☆18May 15, 2026Updated 2 months ago
- Peptide Virtual Screening Pipeline☆14Jul 3, 2019Updated 7 years ago
- ☆91Oct 23, 2025Updated 9 months ago
- ☆15Nov 20, 2024Updated last year
- A unified cross-attention model for predicting antigen binding specificity to both HLA and TCR molecules☆15May 29, 2026Updated 2 months ago
- Code for peptide ligand design with machine learning models.☆35Dec 8, 2024Updated last year
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆130Oct 30, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"☆48Aug 5, 2025Updated 11 months ago
- Code for AAAI 2024 paper "PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein In…☆28Feb 8, 2025Updated last year
- Research repository to the publication: Navigating the Design Space of Equivariant Diffusion-Based Generative Models for De Novo 3D Molec…☆14Apr 2, 2024Updated 2 years ago
- This is the official implementation of the paper "A Deep Learning Approach for Rational Ligand Generation with Property Control via React…☆21Sep 28, 2024Updated last year
- implicit or explicit water model based docking with Autodock vina engine. supporting pharmacophore /position constrained docking☆73Updated this week
- Knowledge-Guided Diffusion Model for 3D Ligand-Pharmacophore Mapping☆50Jun 5, 2026Updated last month
- Disordered protein ensemble prediction☆16Jun 11, 2026Updated last month