List of papers about Peptide research using Deep Learning
☆40Jun 10, 2026Updated last week
Alternatives and similar repositories for awesome-peptide
Users that are interested in awesome-peptide are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Oct 27, 2024Updated last year
- [ICLR 2025] Hotspot-Driven Peptide Design via Multi-Fragment Autoregressive Extension☆20May 5, 2025Updated last year
- Implementation of CycPeptMP, an accurate and efficient model for predicting the membrane permeability of cyclic peptides☆30May 10, 2025Updated last year
- ☆83Jan 23, 2026Updated 4 months ago
- Input files and binding free energy values from our benchmark with QuantumBind-RBFE☆16Apr 16, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tool to design cyclic peptides that mimic proteins and target their binding partners.☆17Jul 9, 2024Updated last year
- Official implementation of SketchMol.☆33Feb 14, 2025Updated last year
- Official repository for DiffPepBuilder and DiffPepDock tools☆127Oct 24, 2025Updated 7 months ago
- ☆13May 18, 2025Updated last year
- This is the official implementation of the paper "A Deep Learning Approach for Rational Ligand Generation with Property Control via React…☆20Sep 28, 2024Updated last year
- A unified cross-attention model for predicting antigen binding specificity to both HLA and TCR molecules☆13May 29, 2026Updated 3 weeks ago
- ☆39Aug 28, 2023Updated 2 years ago
- In silico directed evolution of peptide binders with AlphaFold☆270Apr 24, 2026Updated last month
- Source code for paper "MolSHAP: Interpreting Structure-Activity Relationships for Compound Optimization"☆24Aug 17, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆107May 25, 2025Updated last year
- ☆15May 29, 2024Updated 2 years ago
- Demos of many Rosetta applications☆25Jun 10, 2025Updated last year
- ☆12Oct 9, 2024Updated last year
- A machine learned Molecular Mechanics force field with integration into GROMACS and OpenMM☆62May 11, 2026Updated last month
- Code of "Instruction Multi-Constraint Molecular Generation Using a Teacher-Student Large Language Model"☆13Jul 8, 2025Updated 11 months ago
- This repository is the official code source of PPFlow: Target-Aware Peptide Design with Torsional Flow Matching (ICML2024)☆92May 17, 2025Updated last year
- Code used to mine surfaces.☆33Feb 23, 2025Updated last year
- ☆35Mar 9, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆24Oct 31, 2025Updated 7 months ago
- Disordered protein ensemble prediction☆14Jun 11, 2026Updated last week
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆43May 28, 2026Updated 3 weeks ago
- FEP-SPell-ABFE: An Open Source Alchemical Absolute Binding Free Energy Calculation Workflow for Drug Discovery☆87Jan 8, 2025Updated last year
- SurfDock is a Surface-Informed Diffusion Generative Model for Reliable and Accurate Protein-ligand Complex Prediction☆250Sep 29, 2025Updated 8 months ago
- implicit or explicit water model based docking with Autodock vina engine. supporting pharmacophore /position constrained docking☆73Feb 9, 2026Updated 4 months ago
- Cyclic-peptide - protein complexes benchmark and associated scripts and data☆16Aug 31, 2024Updated last year
- Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold☆27Sep 13, 2024Updated last year
- Synthetic Accessibility via Fragment Assembly Generation☆23Apr 18, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆42Jul 28, 2025Updated 10 months ago
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆124Apr 16, 2025Updated last year
- Tools to calculate descriptors from molecular dynamics and it's application to predict drug resistance.☆15Feb 20, 2023Updated 3 years ago
- ☆13Apr 1, 2026Updated 2 months ago
- Molecular conformer generation using enhanced sampling methods☆20Jul 28, 2025Updated 10 months ago
- ☆29Jan 16, 2026Updated 5 months ago
- PairMap: An Intermediate Insertion Approach for Improving the Accuracy of Relative Free Energy Perturbation Calculations for Distant Comp…☆17Mar 18, 2026Updated 3 months ago