Code for fitting neural spike trains with nonparametric hidden Markov and semi-Markov models built upon mattjj's PyHSMM framework.
☆16Aug 10, 2018Updated 8 years ago
Alternatives and similar repositories for pyhsmm_spiketrains
Users that are interested in pyhsmm_spiketrains are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Revealing neural correlates of behavior without behavioral measurements☆18Nov 18, 2019Updated 6 years ago
- My PhD Thesis☆22May 13, 2016Updated 10 years ago
- autoregressive plugin☆28Nov 3, 2022Updated 3 years ago
- Code for Krause and Drugowitsch (2022). "A large majority of awake hippocampal sharp-wave ripples feature spatial trajectories with momen…☆16Apr 18, 2023Updated 3 years ago
- Python implementation of fast-oopsi, smc-oopsi, wiener, and discretize with binning☆15May 17, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Interpretable neural spike train models with fully-Bayesian inference algorithms☆48Jul 19, 2018Updated 8 years ago
- ☆19Aug 30, 2013Updated 13 years ago
- Pseudo-Marginal Slice Sampling☆19Jun 8, 2016Updated 10 years ago
- State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless data☆53Sep 26, 2025Updated last year
- lazyarray is a Python package that provides a lazily-evaluated numerical array class, larray, based on and compatible with NumPy arrays.☆22May 19, 2026Updated 4 months ago
- Neyman-Scott point process model to identify sequential firing patterns in high-dimensional spike trains☆72Jul 18, 2023Updated 3 years ago
- Kernel Current Source Density☆25Jun 26, 2024Updated 2 years ago
- ☆10Jan 12, 2024Updated 2 years ago
- This repository contains the main scripts for local linear segmentation and subsequent analysis of the resulting model space☆16Oct 8, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A python and C++ library for reading and writing neuronal morphologies☆28Feb 26, 2025Updated last year
- Fast Exact Spike Inference Via L0 Optimization☆16Jun 10, 2020Updated 6 years ago
- Variational Sparse Spectrum Gaussian Process toolkit☆22Apr 7, 2015Updated 11 years ago
- Analytical methods for efficient inference of integrate-and-fire circuit models from single-trial spike trains☆11Oct 30, 2019Updated 6 years ago
- Neuroproc dataset descriptions and dictionaries☆17Jan 2, 2017Updated 9 years ago
- SpikeShip: A method for fast, unsupervised discovery of high-dimensional neural spiking patterns.☆21Apr 18, 2024Updated 2 years ago
- ☆26Dec 6, 2023Updated 2 years ago
- Tree-structured recurrent switching linear dynamical systems☆39Jul 13, 2020Updated 6 years ago
- [DEPRECATED] Matlab API for NWB < 2.0☆11Jul 18, 2016Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Hierarchical Change-Point Detection☆17Oct 25, 2018Updated 7 years ago
- Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).☆72May 12, 2020Updated 6 years ago
- Convolutive Matrix Factorization in Julia☆10Mar 7, 2021Updated 5 years ago
- ☆17Jul 20, 2016Updated 10 years ago
- ☆14Jan 11, 2023Updated 3 years ago
- Example analyses making extensive use of nelpy.☆10May 1, 2019Updated 7 years ago
- Bunch of experiments with Transformers, BERT and GPT-2. Experiments include question-answering and conditional text generation.☆12Sep 11, 2020Updated 6 years ago
- Saxena et al., 2018. Inexpensive, scalable camera system for tracking rats in large spaces☆15Jul 21, 2018Updated 8 years ago
- Estimating the dimensionality of neural data using Shared Variance Component Analysis (SVCA)☆13Nov 13, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Machine Learning Methods for Neural Data Analysis☆22May 16, 2025Updated last year
- Implementation of Aligned Cluster Analysis☆18Sep 29, 2018Updated 8 years ago
- CoNNECT: Convolutional Neural Network for Estimating synaptic Connectivity from spike Trains. Endo et al., bioRxiv (2020).☆14Aug 12, 2022Updated 4 years ago
- Region Of Interest Classification and Tracking☆42Updated this week
- ☆28Aug 15, 2022Updated 4 years ago
- A library for hidden semi-Markov models with explicit durations☆89Aug 21, 2021Updated 5 years ago
- Partial set of hardware designs for a Meta-developed brain computer interface (BCI) research prototype system (Spotlight).☆16Mar 23, 2023Updated 3 years ago