joonan-lab / hail_tutorial
☆13Updated 2 years ago
Alternatives and similar repositories for hail_tutorial:
Users that are interested in hail_tutorial are comparing it to the libraries listed below
- 충남대학교 김준 연구실 튜토리얼☆37Updated 2 weeks ago
- ☆108Updated last year
- Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)☆43Updated last year
- 유전학자를 위한 시퀀싱 자료 분석☆22Updated 4 years ago
- Category-wide association study (CWAS) (Werling et al., 2018; An et al., 2018)☆10Updated last week
- Annotates variants in MAF with OncoKB annotation.☆126Updated 3 months ago
- ☆71Updated 8 months ago
- A continually expanding collection of cancer genomics notes and data☆102Updated 2 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆122Updated 5 months ago
- ☆116Updated last year
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆146Updated 4 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- Updated implementation of the GSEA-P R application for modern R distributions☆94Updated 3 years ago
- Microbial analysis in TCGA data☆90Updated 10 months ago
- GLASS consortium☆38Updated 4 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆171Updated 10 months ago
- Software program for checking sample matching for NGS data☆126Updated 7 months ago
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆155Updated last month
- ☆64Updated last year
- Analysis pipeline for ATAC-seq data☆44Updated last year
- We help each other to study single-cell data☆16Updated 5 months ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆27Updated 4 years ago
- An R package to time somatic mutations☆60Updated 4 years ago
- Clinical interpretation of somatic mutations in cancer☆44Updated 2 years ago
- ☆37Updated 2 years ago
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆101Updated this week
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆139Updated 7 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆104Updated 5 months ago
- ☆8Updated 3 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year