Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940
☆16Mar 22, 2018Updated 7 years ago
Alternatives and similar repositories for MeshNet
Users that are interested in MeshNet are comparing it to the libraries listed below
Sorting:
- Multiple Automatically Generated Templates brain segmentation algorithm☆50Jun 18, 2024Updated last year
- A command line tool for quantification of perfusion from ASL data☆12Jul 13, 2023Updated 2 years ago
- Quantitative methods for muscle MRI☆12Dec 8, 2025Updated 2 months ago
- Julia toolbox for Quantitative Susceptibility Mapping☆16Feb 15, 2024Updated 2 years ago
- Predicts brain age, based on data from Freesurfer 5.3☆10Dec 15, 2025Updated 2 months ago
- CBRAIN is a flexible Ruby on Rails framework for accessing and processing of large data on high-performance computing infrastructures.☆79Updated this week
- Materials for the "Efficient Forward Models for Image Reconstruction" educational talk at the 2023 ISMRM Annual Meeting.☆16Jun 13, 2023Updated 2 years ago
- That’s what I do: I drink and I know things.☆13Sep 24, 2019Updated 6 years ago
- Displays regional stats on Freesurfer surfaces in MATLAB☆16Sep 18, 2020Updated 5 years ago
- HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇☆23Feb 29, 2024Updated 2 years ago
- Its like Tinder, for Brains!☆19Apr 16, 2020Updated 5 years ago
- A reimplementation of MAGeTbrain using only ANTs tools.☆17Jan 5, 2023Updated 3 years ago
- MNI2FS: Surface Rendering of MNI Space Volumes for MATLAB☆18Sep 3, 2021Updated 4 years ago
- ☆19Dec 28, 2016Updated 9 years ago
- Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)☆21Feb 3, 2021Updated 5 years ago
- Catalyst.Neuro☆20Oct 3, 2023Updated 2 years ago
- ☆28Jun 26, 2025Updated 8 months ago
- Code for magnetic susceptibility source separation☆30Sep 16, 2025Updated 5 months ago
- CIVET Installer☆30Jan 29, 2022Updated 4 years ago
- Official TORTOISE Diffusion MRI Processing Pipeline V4 Source Code and Documentation☆33Dec 19, 2025Updated 2 months ago
- MAgnetic Resonance Integral Equation suite☆35Mar 14, 2017Updated 8 years ago
- Bootstrapped Analysis of Stable Clusters- A semi-automated fMRI individual and group level functional parcellation technique☆26Oct 11, 2019Updated 6 years ago
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆77Feb 2, 2026Updated 3 weeks ago
- A framework for quantitative MRI from complex k-space or image data.☆35Aug 13, 2025Updated 6 months ago
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆35Feb 20, 2026Updated last week
- Handy scripts for SPM☆77Sep 24, 2020Updated 5 years ago
- Implementation of Weakly Orthogonal Conjugate Contrast Analysis, with code for related EEG data analysis☆13Dec 13, 2024Updated last year
- Scripts to extract features of cortical folding from MRI☆12Mar 10, 2025Updated 11 months ago
- An integrated framework for DWI Image QC and processing☆13Feb 19, 2026Updated last week
- A Rat fMRI standardized protocol☆14Jul 25, 2024Updated last year
- Subject-wise networks from structural MRI, both vertex- and voxel-wise features (thickness, GM density, curvature, gyrification)☆39Jan 29, 2026Updated 3 weeks ago
- Brain Hippocampus Segmentation. deprecated, use hippodeep_pytorch instead☆35Feb 27, 2020Updated 6 years ago
- Tools for mesh surface-based operations☆40Mar 3, 2025Updated 11 months ago
- A collection of tools for pre-processing, simulating, and post-processing vascular fluid-structure-interaction problems☆14Dec 15, 2025Updated 2 months ago
- A Jupyter Book (v0.6.4) that contains figures for the Phase-unwrapping research paper (written in Julia). First author Nan-kuei Chen and …☆11Feb 24, 2021Updated 5 years ago
- Python code to read/write .annotation files from Halo☆10Feb 19, 2025Updated last year
- Julia package for performing Bloch simulations within the context of Magnetic Resonance Imaging☆13Jan 22, 2026Updated last month
- A Python package to read/write/query/validate BIDS datasets.☆11Oct 21, 2025Updated 4 months ago
- Causal mediation and interaction analysis - 4way decomposition - Rscript☆10Oct 3, 2017Updated 8 years ago