Yet another redundant workflow engine
☆590Apr 16, 2026Updated 2 months ago
Alternatives and similar repositories for redun
Users that are interested in redun are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- insitro's repository for public research code and data☆24Dec 1, 2025Updated 6 months ago
- WDL plugin for pytest☆48Aug 1, 2023Updated 2 years ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 10 months ago
- Command line scientific data management tool☆230Nov 4, 2024Updated last year
- Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…☆14Oct 22, 2025Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Bioinformatics I/O libraries in Rust☆710Jun 9, 2026Updated last week
- ☆69Jul 21, 2023Updated 2 years ago
- a python bioinformatics framework☆172Updated this week
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆141Feb 14, 2025Updated last year
- Pynocular is a lightweight ORM that lets you query your database using Pydantic models and asyncio☆11May 24, 2022Updated 4 years ago
- A DSL for data-driven computational pipelines☆3,415Updated this week
- ☆148May 6, 2024Updated 2 years ago
- A Rust library and command line tool for working with genomic ranges and their data.☆101May 29, 2024Updated 2 years ago
- This is the development home of the workflow management system Snakemake. For general information, see☆2,818Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Unified biological sequence manipulation in Python☆208Jun 12, 2024Updated 2 years ago
- A cross-compatible CLI and Python API for accessing block and object storage☆35Dec 30, 2025Updated 5 months ago
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆85Jun 5, 2026Updated last week
- Performant Pythonic GenomicRanges☆495Apr 23, 2026Updated last month
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- 🧬 gget enables efficient querying of genomic reference databases☆1,159Updated this week
- A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).☆932Jun 11, 2026Updated last week
- Efficient querying of biological databases☆44Oct 27, 2025Updated 7 months ago
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery☆23Oct 3, 2024Updated last year
- A python package for protein inference in Mass Spectrometric data analysis.☆10Jun 6, 2022Updated 4 years ago
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 7 months ago
- (WIP) best-practices workflow for rare disease☆64Jul 1, 2024Updated last year
- Genomic interval operations on Pandas DataFrames☆191Jun 1, 2026Updated 2 weeks ago
- FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.☆249Aug 10, 2025Updated 10 months ago
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆11Nov 22, 2024Updated last year
- Genomic Features in Python from BioConductor's AnnotationHub☆23Jun 8, 2026Updated last week
- Fast interval intersection library☆44Aug 20, 2025Updated 9 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- a minimal, scriptable genome browser for python☆54Dec 20, 2024Updated last year
- Scalable genetics toolkit☆277Mar 2, 2026Updated 3 months ago
- Tools for munging genomic data☆21Jul 9, 2019Updated 6 years ago
- DuckDB Extension for working with bioinformatic data.☆20Oct 18, 2023Updated 2 years ago
- Proteomics search & quantification so fast that it feels like magic☆295Jun 5, 2026Updated last week
- ☆34May 19, 2026Updated 3 weeks ago
- Open-source data lakehouse for biology. Query, trace & validate with a lineage-native lakehouse that supports bio-formats, registries & o…☆268Updated this week