Alternatives and similar repositories for redun

Users that are interested in redun are comparing it to the libraries listed below

• Technion-Kishony-lab / quibbler
  Your data - interactive!
  ☆331Updated 3 months ago
• latchbio / latch
  a python bioinformatics framework
  ☆170Updated last week
• seq-lang / seq
  A high-performance, Pythonic language for bioinformatics
  ☆705Updated 3 years ago
• modernatx / seqlike
  Unified biological sequence manipulation in Python
  ☆207Updated last year
• sgkit-dev / sgkit
  Scalable genetics toolkit
  ☆270Updated 2 months ago
• pyranges / ncls
  NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.
  ☆224Updated 5 months ago
• wheretrue / biobear
  Work with bioinformatic files using Arrow, Polars, and/or DuckDB
  ☆191Updated 9 months ago
• dynotx / liminal-orm
  ORM and toolkit to help keep your Benchling schemas and downstream dependencies in sync.
  ☆49Updated 2 weeks ago
• scverse / anndata
  Annotated data.
  ☆692Updated this week
• mamba-org / micromamba-docker
  Rapid builds of small Conda-based containers using micromamba.
  ☆288Updated last week
• DataBiosphere / dsub
  Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.
  ☆275Updated last week
• jnothman / UpSetPlot
  Draw UpSet plots with Matplotlib
  ☆373Updated last year
• Edinburgh-Genome-Foundry / DnaChisel
  A versatile DNA sequence optimizer
  ☆257Updated last month
• jejomath / foam
  Foam low-code for coders app development framework
  ☆19Updated last year
• flekschas / jupyter-scatter
  Interactive 2D scatter plot widget for Jupyter Lab and Notebook. Scales to millions of points!
  ☆451Updated 2 weeks ago
• gosling-lang / gos
  A declarative interactive genomics visualization library for Python.
  ☆232Updated 3 weeks ago
• cytoscape / ipycytoscape
  A Cytoscape Jupyter widget
  ☆289Updated 2 months ago
• pipefunc / pipefunc
  Lightweight fast function pipeline (DAG) creation in pure Python for scientific (HPC) workflows 🕸️🧪
  ☆433Updated this week
• common-workflow-language / cwltool
  Common Workflow Language reference implementation
  ☆360Updated this week
• conda / grayskull
  Grayskull - Recipe generator for Conda
  ☆364Updated last week
• chanzuckerberg / miniwdl
  Workflow Description Language developer tools & local runner
  ☆202Updated last month
• snakemake / snakemake
  This is the development home of the workflow management system Snakemake. For general information, see
  ☆2,659Updated last week
• jmschrei / ledidi
  Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.
  ☆96Updated 6 months ago
• lmcinnes / glasbey
  Algorithmically create or extend categorical colour palettes
  ☆227Updated 2 months ago
• conda / conda-lock
  Lightweight lockfile for conda environments
  ☆542Updated this week
• pachterlab / gget
  🧬 gget enables efficient querying of genomic reference databases
  ☆1,082Updated last week
• SecureDNA / quickdna
  Fast DNA manipulation for Rust and Python
  ☆61Updated last week
• stjude / learngenomics.dev
  A guided, intuitive introduction to genomics for software engineers. Curated by the community.
  ☆385Updated last year
• fatiando / pooch
  A friend to fetch your data files
  ☆706Updated last week
• laminlabs / lamindb
  A data framework for biology. Makes your data queryable, traceable, reproducible, and FAIR. One API: lakehouse, lineage, feature store, o…
  ☆209Updated this week