MrMimic / MEDOCLinks
MEDOC is a free python wrapper to clone MEDLINE into local mySQL database
☆24Updated last year
Alternatives and similar repositories for MEDOC
Users that are interested in MEDOC are comparing it to the libraries listed below
Sorting:
- Downloader, preprocessor, parser and deduper for NIH and NSF grants☆20Updated 6 years ago
- An R data package for NIH EXPORTER data☆15Updated 2 months ago
- An R package for evaluating phenotype algorithms.☆17Updated 7 months ago
- Classes for ClinicalTrials.gov related projects☆47Updated 5 years ago
- Simple python parser for MEDLINE, Pubmed OA affiliation string☆37Updated 3 years ago
- Keeping track of activities around research data☆32Updated last month
- Sample code that demonstrates the use of the NCBO REST services☆44Updated last year
- ARCHIVED Essential tools and utility functions to facilitate the data processing pipeline, data cleaning and data analysing of clinical…☆55Updated 2 years ago
- Python parser for Web of science XML, Web of Science parser, WoS parser☆29Updated 2 years ago
- Tools for extracting and processing Pubmed and Pubmed Central records.☆47Updated 5 years ago
- R package to easily interface with OMOP-formatted EHR data.☆36Updated 5 years ago
- HDR UK National Phenotype Library☆22Updated 2 years ago
- using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)☆10Updated 2 years ago
- Machine learning RCT classifier☆22Updated 2 years ago
- Clinical Natural Language Processing using spaCy, scispacy, and medspacy☆100Updated last year
- Parse full text XML documents from Pubmed Central☆34Updated 5 years ago
- PubMed analysis: code and data☆97Updated 3 years ago
- R package for delineating temporal dataset shifts in Eletronic Health Records☆17Updated last year
- Transform the OMOP model to graph model☆22Updated 5 months ago
- PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as i…☆26Updated 6 years ago
- Access and search medRxiv and bioRxiv preprint data☆57Updated last week
- Visualize the proportion of results for a given PubMed search over time and compare searches to one another!☆12Updated 2 years ago
- An R package for generating features (covariates) for a cohort using data in the Common Data Model.☆63Updated this week
- Use machine learning to find patterns of similar eligibility protocol criteria for clinical trials☆18Updated 6 years ago
- ACT COVID Ontology☆15Updated 3 years ago
- Gathering metadata about publications, patents, grants, clinical trials and policy documents from PubMed database☆43Updated last year
- Code used to generate a dataset quantifying multi-drug use in 80 million patients' prescription drugs claims☆10Updated 7 years ago
- A Data Package which is a database of public and private registers of clinical trials.☆35Updated 9 years ago
- Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.☆48Updated 11 months ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated last year