MrMimic / MEDOC
MEDOC is a free python wrapper to clone MEDLINE into local mySQL database
☆23Updated last year
Alternatives and similar repositories for MEDOC:
Users that are interested in MEDOC are comparing it to the libraries listed below
- Use machine learning to find patterns of similar eligibility protocol criteria for clinical trials☆18Updated 6 years ago
- Downloader, preprocessor, parser and deduper for NIH and NSF grants☆20Updated 6 years ago
- Sample code that demonstrates the use of the NCBO REST services☆41Updated last year
- Visualize the proportion of results for a given PubMed search over time and compare searches to one another!☆11Updated last year
- Transform the OMOP model to graph model☆19Updated last month
- A Data Package which is a database of public and private registers of clinical trials.☆35Updated 8 years ago
- An R data package for NIH EXPORTER data☆12Updated last year
- Lookup PubMed records and make Publication objects with info about a scientific publication☆41Updated 2 years ago
- Semantic query and text mining tool☆22Updated last year
- Dataset containing 7,025 discharge summary notes from the MIMIC III dataset annotated for 7 SBDHs☆13Updated 2 years ago
- ☆17Updated 2 weeks ago
- Grounding of biomedical named entities with contextual disambiguation☆40Updated 3 months ago
- Clinical Natural Language Processing using spaCy, scispacy, and medspacy☆99Updated 9 months ago
- 🪝 What's the latest version for each database?☆27Updated this week
- Tools for extracting and processing Pubmed and Pubmed Central records.☆43Updated 5 years ago
- ☆52Updated 4 years ago
- Classes for ClinicalTrials.gov related projects☆47Updated 5 years ago
- Machine learning RCT classifier☆22Updated last year
- A Python package to download full article PDFs from OA publications☆40Updated 2 weeks ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- Parse full text XML documents from Pubmed Central☆33Updated 5 years ago
- ACT COVID Ontology☆15Updated 3 years ago
- Code to scrape/handle/extract data from various ICTRP Primary Registries☆20Updated 2 years ago
- ARCHIVED Essential tools and utility functions to facilitate the data processing pipeline, data cleaning and data analysing of clinical…☆55Updated 2 years ago
- Computing term cooccurrence in MEDLINE☆17Updated 3 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 2 years ago
- PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as i…☆25Updated 6 years ago
- ☆13Updated 9 years ago
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆27Updated 3 years ago
- ETL UK-Biobank☆13Updated 2 years ago