microbial bioinformation
☆13May 14, 2020Updated 6 years ago
Alternatives and similar repositories for YongxinLiu
Users that are interested in YongxinLiu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Interactive package for Short AsyNchronous Time-series Analysis (SANTA) in R, implemented in Shiny☆11Mar 6, 2024Updated 2 years ago
- Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.☆15Jun 17, 2026Updated 3 months ago
- 📦 A Command Line Tool for downloading protein structures, sequences and MSAs☆10Nov 21, 2017Updated 8 years ago
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 8 years ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆20Mar 17, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆45Sep 3, 2024Updated 2 years ago
- ☆65Jan 25, 2024Updated 2 years ago
- CCLasso: Correlation Inference for Compositional Data through Lasso☆18Jan 8, 2016Updated 10 years ago
- R package for systems biology modeling☆17May 13, 2017Updated 9 years ago
- GPT-based protein language model for PTM site prediction☆20Aug 11, 2024Updated 2 years ago
- A rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller.☆33Aug 19, 2026Updated last month
- Code for biostar tutorials - mostly R and Perl☆50Jul 31, 2024Updated 2 years ago
- NSU bioinformatics Python course☆14Sep 24, 2024Updated last year
- Lesson for the shell for genomics☆11Jan 12, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- gnomAD browser pre-ASHG 2018☆32Nov 2, 2020Updated 5 years ago
- Cook feeds☆10Nov 11, 2022Updated 3 years ago
- ATAC-seq lab for BIOINF525☆10Mar 31, 2016Updated 10 years ago
- Bioinformatics Algorithms☆16Dec 17, 2013Updated 12 years ago
- Workshop content for http://dib-training.readthedocs.org/en/pub/2016-01-13-adv-beg-shell.html☆14Feb 23, 2018Updated 8 years ago
- ☆125Oct 12, 2021Updated 4 years ago
- A repo with supplementary material for a manuscript on the origin of SARS-CoV-2 origins☆11Jun 26, 2020Updated 6 years ago
- ☆14Feb 4, 2015Updated 11 years ago
- Bioinformatics scripts☆14Dec 23, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 4 years ago
- ☆24Jan 6, 2020Updated 6 years ago
- Z Hu et al. The repertoire of serous ovarian cancer non-genetic heterogeneity revealed by single-cell sequencing of normal fallopian tube…☆13Nov 22, 2020Updated 5 years ago
- Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes;…☆20Sep 2, 2025Updated last year
- Syllabus and materials for bioinformatics lecture + lab☆21Apr 23, 2015Updated 11 years ago
- Documentation for Evolview☆29Nov 27, 2021Updated 4 years ago
- Awk, bash, python scripts for processing NGS data☆14Nov 6, 2015Updated 10 years ago
- Local version of the virus identification and analysis web server (tool set)☆120May 13, 2026Updated 4 months ago
- Easy Metagenome Pipeline☆582Jun 14, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Jun 9, 2025Updated last year
- 🏅 Open-source cognitive frameworks of Nobel Medicine laureates (2004-2025), distilled into runnable thinking tools☆22Apr 6, 2026Updated 5 months ago
- zsh plugin similar to vim-exchange☆15Jun 24, 2020Updated 6 years ago
- ☆23Jan 6, 2026Updated 8 months ago
- ☆13Aug 14, 2017Updated 9 years ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Mar 10, 2026Updated 6 months ago
- Adds support for searching the current line (in normal vi mode) to zsh.☆14Apr 30, 2019Updated 7 years ago