gifford-lab / optivaxLinks
☆22Updated 4 years ago
Alternatives and similar repositories for optivax
Users that are interested in optivax are comparing it to the libraries listed below
Sorting:
- code for Gogleva et al manuscript☆46Updated 3 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 9 years ago
- ☆49Updated last year
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆42Updated last year
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆29Updated 8 years ago
- A convolutional neural network to predict PPI interactions☆42Updated 7 years ago
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆16Updated 3 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- ☆52Updated 5 years ago
- Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"☆41Updated 2 years ago
- ☆11Updated 5 years ago
- Readings for "A Unified View of Relational Deep Learning for Drug Pair Scoring." (IJCAI 2022)☆98Updated 3 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- Function prediction using a deep ontology-aware classifier☆85Updated 3 years ago
- Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)☆73Updated 2 years ago
- TBiNet: A deep neural network for predicting transcription factor binding sites using attention mechanism☆25Updated 4 years ago
- ☆23Updated 2 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 4 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- ☆25Updated 3 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆32Updated 5 months ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆75Updated 4 years ago
- Package for processing and analyzing glycans and their role in biology.☆83Updated last week
- Evolutionary velocity with protein language models☆94Updated last week
- Deep learning-based language model for glycan sequences☆17Updated 5 years ago
- Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification☆33Updated 4 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 4 years ago
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Updated 3 years ago
- Analysis and figure code from Alley et al. 2019.☆59Updated 2 years ago
- Code for the analyses in the human reference interactome paper.☆28Updated 3 years ago