dib-lab / khmerLinks
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
☆782Updated last year
Alternatives and similar repositories for khmer
Users that are interested in khmer are comparing it to the libraries listed below
Sorting:
- Where cloud lives.☆344Updated 3 years ago
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,037Updated 3 weeks ago
- ARCHIVED R client for the PLoS Journals API☆318Updated 3 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,019Updated last year
- Incubator for useful bioinformatics code, primarily in Python and R☆644Updated 10 months ago
- An ultrafast memory-efficient short read aligner☆264Updated 3 years ago
- scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resourc…☆992Updated last week
- JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.☆471Updated 4 months ago
- bedtools - the swiss army knife for genome arithmetic☆1,011Updated 8 months ago
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆293Updated last month
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆706Updated this week
- DNA plotting library for Python☆300Updated last year
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆529Updated this week
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆856Updated 6 months ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆870Updated last week
- Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.☆285Updated 2 years ago
- Source of biopython.org website, migrated from MediaWiki☆161Updated last month
- GenomeTools genome analysis system.☆330Updated 3 weeks ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆654Updated 3 years ago
- tools for working with genome variation graphs☆1,266Updated this week
- Event driven flight computer for rockets. Flown on L-10 and L-11.☆430Updated 8 years ago
- A fast multi-threaded k-mer counter☆521Updated last year
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆296Updated 7 years ago
- Python for Bioinformatics☆262Updated 5 years ago
- Java utilities for Bioinformatics☆513Updated this week
- An analysis and visualization platform for 'omics data☆490Updated last week
- SeqAn's official repository.☆499Updated last week
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆851Updated last year
- Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data☆297Updated 3 months ago
- C library for high-throughput sequencing data formats☆892Updated last week