dib-lab / khmerLinks
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
☆775Updated last year
Alternatives and similar repositories for khmer
Users that are interested in khmer are comparing it to the libraries listed below
Sorting:
- Where cloud lives.☆340Updated 2 years ago
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,025Updated last month
- scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resourc…☆966Updated last week
- Incubator for useful bioinformatics code, primarily in Python and R☆630Updated 6 months ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,011Updated last year
- ARCHIVED R client for the PLoS Journals API☆317Updated 2 years ago
- JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.☆472Updated last month
- An ultrafast memory-efficient short read aligner☆264Updated 3 years ago
- A curated list of awesome deep learning applications in the field of computational biology☆1,935Updated 3 years ago
- DNA plotting library for Python☆298Updated last year
- bedtools - the swiss army knife for genome arithmetic☆998Updated 5 months ago
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆697Updated this week
- 🔬A library of JavaScript components to represent biological data☆501Updated 3 years ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆849Updated 2 months ago
- C library for high-throughput sequencing data formats☆874Updated last week
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆294Updated 7 years ago
- Efficient pythonic random access to fasta subsequences☆479Updated this week
- Python for Bioinformatics☆260Updated 4 years ago
- Python and C++ code for reading and writing genomics data.☆794Updated 3 years ago
- Source of biopython.org website, migrated from MediaWiki☆158Updated 2 months ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆840Updated 3 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆519Updated this week
- Syntax highlighting for computational biology☆269Updated 2 years ago
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆689Updated 3 weeks ago
- SeqAn's official repository.☆495Updated 2 weeks ago
- Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.☆286Updated 2 years ago
- BWK awk modified for biological data☆626Updated 3 years ago
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,774Updated 2 weeks ago
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆398Updated 3 weeks ago
- Code and examples for JHU Computational Genomics class☆304Updated 10 months ago