dib-lab / khmerLinks
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
☆771Updated last year
Alternatives and similar repositories for khmer
Users that are interested in khmer are comparing it to the libraries listed below
Sorting:
- Where cloud lives.☆340Updated 2 years ago
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,020Updated last week
- ARCHIVED R client for the PLoS Journals API☆317Updated 2 years ago
- scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resourc…☆951Updated this week
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,008Updated 10 months ago
- Incubator for useful bioinformatics code, primarily in Python and R☆625Updated 5 months ago
- DNA plotting library for Python☆297Updated last year
- Python and C++ code for reading and writing genomics data.☆792Updated 3 years ago
- Event driven flight computer for rockets. Flown on L-10 and L-11.☆429Updated 8 years ago
- Source of biopython.org website, migrated from MediaWiki☆158Updated 3 weeks ago
- An ultrafast memory-efficient short read aligner☆264Updated 3 years ago
- 🔬A library of JavaScript components to represent biological data☆502Updated 3 years ago
- C library for high-throughput sequencing data formats☆860Updated this week
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆686Updated this week
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆836Updated last month
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆682Updated this week
- Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data☆292Updated 2 months ago
- bedtools - the swiss army knife for genome arithmetic☆985Updated 4 months ago
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆291Updated 7 years ago
- GenomeTools genome analysis system.☆316Updated last year
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆216Updated 3 weeks ago
- tools for working with genome variation graphs☆1,218Updated last week
- A fast multi-threaded k-mer counter☆507Updated last year
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆834Updated last month
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆294Updated 6 years ago
- BWK awk modified for biological data☆624Updated 2 years ago
- Python for Bioinformatics☆255Updated 4 years ago
- Cloud-native genomic dataframes and batch computing☆1,017Updated this week
- Core BioPerl 1.x code☆311Updated 2 months ago
- Assemble large genomes using short reads☆321Updated 3 months ago