Self-Consistent Neural Network for Protein Stability Prediction upon Mutations
☆10Sep 22, 2021Updated 5 years ago
Alternatives and similar repositories for SCONES
Users that are interested in SCONES are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 3 years ago
- ☆22Dec 15, 2022Updated 3 years ago
- A Python package to generate free energy landscape (FEL) of molecular dynamics (MD) trajectory obtained from GROMACS. It also extracts th…☆15Apr 4, 2025Updated last year
- ☆10May 31, 2021Updated 5 years ago
- Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…☆22Mar 29, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. …☆23Jun 3, 2023Updated 3 years ago
- example demonstrating a free energy estimation starting from OFF and OpenMM☆12Oct 21, 2020Updated 6 years ago
- a novel approach to predict the protein solubility based on the protein sequence.☆12May 1, 2024Updated 2 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆71Mar 9, 2026Updated 7 months ago
- Repository for the DIY 3-D printable FINDUS liquid handling workstation☆10Jun 24, 2024Updated 2 years ago
- Principal Interacting Orbital analysis for python 3☆10Oct 29, 2023Updated 2 years ago
- Constraint-based Metabolic Modeling Course☆12Jul 25, 2022Updated 4 years ago
- ☆39May 31, 2021Updated 5 years ago
- The official GitHub repository for the Nature Communications paper "Computational Design of Generalist Cyclopropanases with Stereodiverge…☆16Jan 23, 2026Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Sequence-based protein solubility prediction using multidimensional embedding☆13Apr 19, 2021Updated 5 years ago
- Scoring methods for predicting the DDG upon protein mutation☆18Feb 20, 2023Updated 3 years ago
- Enzyme Activity Prediction of Sequence Variants onNovel Substrates using Improved Substrate Encodings and Convolutional Pooling☆18Nov 28, 2022Updated 3 years ago
- Sequence-based protein solubility predictor☆11Apr 1, 2020Updated 6 years ago
- A tutorial on cobrapy☆10Sep 1, 2026Updated last month
- DeepRMSD+Vina is a computational framework that integrates ligand binding pose optimization and screening.☆44Jan 22, 2024Updated 2 years ago
- DSResSol: A sequence-based solubility predictor created with Dilated Squeeze Excitation Residual Networks☆12May 30, 2024Updated 2 years ago
- AARON (An Automated Reaction Optimizer for New catalysts) automates DFT optimizations of TS structures for asymmetric catalytic reactions…☆16Jan 12, 2021Updated 5 years ago
- SIEVE-Score: interaction energy-based virtual screening method based on random forest.☆14Oct 2, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…☆15May 24, 2018Updated 8 years ago
- ☆13Jul 14, 2023Updated 3 years ago
- predict stability change upon mutation☆33Jun 28, 2024Updated 2 years ago
- 🏷️ Unified access to biomedical ontologies☆12Aug 13, 2026Updated 2 months ago
- Super snazzy online phylogenetic tree viewer with automatic customization using simple, tab-separated text files.☆31Apr 10, 2023Updated 3 years ago
- ☆58Apr 15, 2026Updated 6 months ago
- ☆42Aug 20, 2026Updated 2 months ago
- bakerlab pymol scripts☆27Feb 6, 2020Updated 6 years ago
- MSMD (mixed-solvent molecular dynamics) engine and analysis tools☆19Apr 16, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- For the purpose of post progressing of MD carried by gromacs☆24Jul 2, 2025Updated last year
- An accurate and efficient protein sequence design approach☆27Mar 16, 2025Updated last year
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆19May 11, 2026Updated 5 months ago
- Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…☆207Jul 4, 2023Updated 3 years ago
- ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…☆120Dec 20, 2023Updated 2 years ago
- Applying JEPA based architectures to bio☆17Aug 13, 2026Updated 2 months ago
- The BioJS MSA viewer wrapped into an R package☆12Sep 27, 2016Updated 10 years ago