spe-uob / 2020-HealthcareLakeETLLinks
FHIR to OMOP using PySpark on AWS Glue
☆14Updated 4 years ago
Alternatives and similar repositories for 2020-HealthcareLakeETL
Users that are interested in 2020-HealthcareLakeETL are comparing it to the libraries listed below
Sorting:
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆24Updated 4 years ago
- Conversion from FHIR HL7 to OMOP CDM☆17Updated 6 months ago
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries!☆45Updated 2 weeks ago
- Hephaestus - ETL and ML tools for OHDSI - OMOP CDM☆13Updated 2 years ago
- FHIR to pandas dataframe for data analytics, AI and ML!☆38Updated last month
- ☆14Updated 5 months ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆37Updated last year
- OMOP <-> FHIR mapper☆12Updated 2 years ago
- A web application to find patients, build cohorts and visualize health records☆48Updated last week
- The PEDSnet Data Quality Assessment Toolkit (OMOP CDM)☆24Updated 4 years ago
- ☆17Updated 6 years ago
- A FHIR implementation guide that supports conversion of data from FHIR to OMOP and OMOP to FHIR☆14Updated last week
- ETL Tool for converting datasets to OMOP CDM☆33Updated 2 years ago
- ☆29Updated 2 years ago
- Pilot model and converter for integration of radiology data into OMOP-CDM☆22Updated 5 years ago
- Notebooks etc. Analysis of SNOMED-CT for the Clinical Coding Pilot and related work☆12Updated 4 years ago
- FHIR Python Analysis Client and Kit (FHIRPACK) is a general purpose FHIR client that simplifies the access, analysis and representation o…☆48Updated 2 years ago
- Workproducts to ETL CMS datasets into OMOP Common Data Model☆100Updated 3 years ago
- ☆28Updated 7 years ago
- Course materials for OHDSI ETL tutorial☆49Updated 9 months ago
- CDM Builder leveraging AWS Lambda☆17Updated this week
- A package supporting the conversion from Synthea CSV to OMOP CDM☆114Updated 5 months ago
- FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured informat…☆68Updated last week
- Main OMOPonFHIR Settings☆46Updated 3 years ago
- ☆12Updated 2 months ago
- ☆25Updated 6 months ago
- [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM☆29Updated last month
- Virtual Machine containing SynPUF data in OMOP CDM, a RDBS including query client, WebAPI, ATLAS, R and Python.☆55Updated 4 years ago
- Publication: Linked electronic health records for research on a nationwide cohort including over 54 million people in England☆18Updated 2 years ago
- A tool to help improve data quality standards in observational data science.☆165Updated this week