spe-uob / 2020-HealthcareLakeETLLinks
FHIR to OMOP using PySpark on AWS Glue
☆14Updated 4 years ago
Alternatives and similar repositories for 2020-HealthcareLakeETL
Users that are interested in 2020-HealthcareLakeETL are comparing it to the libraries listed below
Sorting:
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆24Updated 4 years ago
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries!☆48Updated this week
- Conversion from FHIR HL7 to OMOP CDM☆17Updated 7 months ago
- ☆17Updated 6 years ago
- FHIR to pandas dataframe for data analytics, AI and ML!☆40Updated this week
- Hephaestus - ETL and ML tools for OHDSI - OMOP CDM☆13Updated 2 years ago
- OMOP <-> FHIR mapper☆12Updated 2 years ago
- ☆14Updated 5 months ago
- Pilot model and converter for integration of radiology data into OMOP-CDM☆22Updated 5 years ago
- ETL Tool for converting datasets to OMOP CDM☆33Updated 2 years ago
- ☆29Updated 7 years ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆38Updated last year
- A FHIR implementation guide that supports conversion of data from FHIR to OMOP and OMOP to FHIR☆14Updated 3 weeks ago
- Workproducts to ETL CMS datasets into OMOP Common Data Model☆100Updated 3 years ago
- An ASGI FHIR API framework built on top of FastAPI and FHIR Resources☆43Updated 2 weeks ago
- Virtual Machine containing SynPUF data in OMOP CDM, a RDBS including query client, WebAPI, ATLAS, R and Python.☆56Updated 4 years ago
- Publication: Linked electronic health records for research on a nationwide cohort including over 54 million people in England☆18Updated 2 years ago
- A web application to find patients, build cohorts and visualize health records☆48Updated last week
- CDM Builder leveraging AWS Lambda☆17Updated last week
- Notebooks etc. Analysis of SNOMED-CT for the Clinical Coding Pilot and related work☆13Updated 4 years ago
- Automation code and documentation for standing up the OHDSI toolstack in an AWS environment☆75Updated 2 years ago
- The PEDSnet Data Quality Assessment Toolkit (OMOP CDM)☆25Updated 4 years ago
- The Minimum Information About BIobank data Sharing (MIABIS) is a biobank-specific terminology enabling the sharing of minimal biobank-rel…☆24Updated last week
- Connector that loads FHIR r4 USCDIv3 JSON data from local file storage into the Tuva common data model in Snowflake.☆27Updated this week
- Main OMOPonFHIR Settings☆46Updated 3 years ago
- Streamlined Data Mapping to OMOP☆19Updated last week
- A tool to help improve data quality standards in observational data science.☆165Updated last week
- Course materials for OHDSI ETL tutorial☆51Updated 10 months ago
- ☆29Updated 2 years ago
- Outcomes Insights' Data Model for Clinical Research☆19Updated 2 weeks ago