A tool for spatial omics single-modal clustering, multi-modal clustering, slice alignment, cross-modal alignment, multi-modal alignment, and 3D reconstruction.
☆20May 6, 2026Updated 3 months ago
Alternatives and similar repositories for 3d-OT
Users that are interested in 3d-OT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [Advanced Science 2025] SpaBatch: Deep learning-based cross-slice integration and 3D spatial domain identification in spatial transcripto…☆21Jun 8, 2026Updated 2 months ago
- The source code for "High-Parameter Spatial Multi-Omics through Histology-Anchored Integration"☆38May 15, 2026Updated 2 months ago
- a deep generative model for single-cell survival analysis☆26Dec 2, 2025Updated 8 months ago
- We propose STG3Net, a novel method designed to integrate multiple SRT datasets and correct batch effects.☆15Aug 8, 2024Updated 2 years ago
- Deep Clustering Representation for Spatially Resolved Transcriptomics Data via Multi-view Variational Graph Auto-Encoders with Consensus …☆15Jun 24, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- Demonstration of AI review of existing functional annotations☆24Updated this week
- ☆13Nov 3, 2023Updated 2 years ago
- A Course on designing high-throughput experiments☆13Sep 25, 2024Updated last year
- Masked adversarial neural network for cell type deconvolution (MACD) in spatial transcriptomics data☆14Jun 16, 2025Updated last year
- TOAST: Spatially Aware Optimal Transport for Alignment of Spatial Omics Data☆16Apr 9, 2026Updated 4 months ago
- Pretrained-Guided Masked Conditional Diffusion Models for Microbiome Data Analysis☆14Aug 7, 2024Updated 2 years ago
- ☆14Jun 22, 2026Updated last month
- AI Hedge Fund Repo integrate with DeepSeek V3 and R1 hosted on SiliconFlow.☆12Feb 3, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Aug 3, 2023Updated 3 years ago
- Marginalia 是一个为 Zotero 设计的 AI 聊天插件,让你能够与论文进行智能对话,快速理解和分析学术文献。☆19May 16, 2026Updated 2 months ago
- Public EEG-based motor imagery (MI) datasets☆13Feb 1, 2024Updated 2 years ago
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆19Aug 7, 2024Updated 2 years ago
- ☆17May 12, 2026Updated 2 months ago
- Geometric single cell deconvolution☆18Apr 20, 2026Updated 3 months ago
- ☆21May 14, 2026Updated 2 months ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆19Jun 9, 2025Updated last year
- ☆23Oct 27, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13Jun 16, 2025Updated last year
- scASDC is an attention enhanced structural deep clustering method for scRNA-seq cell clustering☆17Aug 8, 2024Updated 2 years ago
- Official repository for Characterization of tumor heterogeneity through segmentation-free representation learning on multiplexed imaging …☆16Jul 17, 2026Updated 3 weeks ago
- Website for BIS 015L, Data Science for Biologists, UC Davis.☆187Mar 12, 2026Updated 4 months ago
- ☆16May 27, 2024Updated 2 years ago
- ☆37Oct 10, 2025Updated 10 months ago
- Reconstructing True 3D Spatial Omics at Single-Cell Resolution☆19May 13, 2026Updated 2 months ago
- High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)☆22Jul 24, 2024Updated 2 years ago
- ☆63Jul 23, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics☆20Apr 5, 2023Updated 3 years ago
- Regulatory Temporal Interaction Network Inference☆17Mar 11, 2026Updated 4 months ago
- ☆22Jun 19, 2020Updated 6 years ago
- The source code of the multimodal learning algorithm, Multi-Embed.☆20May 11, 2026Updated 3 months ago
- Automatic annotation of single-cell RNA-seq data from the literature☆48Jul 20, 2025Updated last year
- Companion videos and exercises for Manning Publication's Deep Learning with R☆15Feb 3, 2019Updated 7 years ago
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Aug 11, 2023Updated 2 years ago