Alternatives and similar repositories for AbcSmc

Users that are interested in AbcSmc are comparing it to the libraries listed below

• jtimonen / odemodeling
  R-package for building and fitting Bayesian ODE models in Stan
  ☆28Updated 11 months ago
• seantalts / simulation-based-calibration
  Repo for code from the SBC paper
  ☆24Updated 6 years ago
• epirecipes / epicookbook
  A cookbook of epidemiological models
  ☆13Updated 6 years ago
• charlesm93 / stanTutorial
  Files for StanCon 2023 tutorial.
  ☆17Updated last year
• aakhmetz / COVID19IncubationPeriod
  Study on estimating incubation period distribution and other epidemiological parameters for a novel coronavirus disease (COVID-19)
  ☆14Updated 5 years ago
• elizavetasemenova / PriorVAE
  Code of PriorVAE: encoding spatial priors with variational autoencoders
  ☆12Updated 2 years ago
• GuillaumeBiessy / WH
  Revisiting Whittaker-Henderson Smoothing
  ☆12Updated last month
• cmmid / covid-age
  Analysis code and data for COVID-19 age-specific clinical fraction
  ☆23Updated 5 years ago
• andy-iskauskas / hmer
  An R package for Bayes Linear emulation and history matching.
  ☆16Updated 5 months ago
• epidemics / COVIDNPIs
  Data and code for COVID-19 NPI effectiveness estimation.
  ☆30Updated 4 years ago
• onnela-lab / gptools
  Gaussian processes on graphs and lattices in Stan.
  ☆18Updated 4 months ago
• avehtari / rhat_ess
  Rank-normalization, folding, and localization: An improved R-hat for assessing convergence of MCMC
  ☆32Updated 3 years ago
• ryantibs / quantgen
  Tools for generalized quantile modeling
  ☆15Updated 2 years ago
• alan-turing-institute / jbc-turing-rss-nowcasting
  A Bayesian model for time-series count data with weekend effects and a lagged reporting process
  ☆10Updated 3 years ago
• nickeubank / JuliaOverview
  Beamer presentation introducing Julia
  ☆13Updated 7 years ago
• akira-endo / Intro-PMCMC
  Endo A. et al., "Introduction to the particle Markov-chain Monte Carlo." Epidemics, 2019.
  ☆12Updated 3 years ago
• epiforecasts / inc2prev
  Estimate epidemiological quantities from repeated cross-sectional prevalence measurements
  ☆17Updated last year
• SABS-R3-Epidemiology / epiabm
  Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.
  ☆18Updated last month
• Emergent-Epidemics / infectious_disease_predictability
  Code and data for On the Predictability of Infectious Disease Outbreaks by SV Scarpino & G Petri
  ☆20Updated 5 years ago
• skdeshpande91 / flexBART
  Towards a more flexible BART
  ☆22Updated 2 weeks ago
• kpzoo / EpiFilter
  Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…
  ☆22Updated last year
• gabriuma / basis_functions_approach_to_GP
  ☆56Updated 3 years ago
• ukhsa-collaboration / pygom
  ODE modelling in Python
  ☆30Updated 3 weeks ago
• amanda-minter / abc_R
  ☆11Updated 5 years ago
• scheidan / adaptMCMC
  R package that provides an implementation of the generic adaptive Monte Carlo Markov chain sampler proposed by Vihola (2011).
  ☆10Updated last year
• epiforecasts / EpiNow
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆33Updated 2 years ago
• jtimonen / lgpr
  R-package for interpretable nonparametric modeling of longitudinal data using additive Gaussian processes. Contains functionality for in…
  ☆25Updated 11 months ago
• martinkrz / posepi1
  Points of Significance: Modeling infectious epidemics
  ☆11Updated 9 months ago
• betanalpha / mcmc_diagnostics
  Markov chain Monte Carlo general, and Hamiltonian Monte Carlo specific, diagnostics for Stan
  ☆87Updated last month
• tjhladish / EpiFire
  A fast C++ API for simulating the spread of epidemics on contact networks.
  ☆41Updated last year