Alternatives and similar repositories for cryoet-data-portal

Users that are interested in cryoet-data-portal are comparing it to the libraries listed below

• eisfabian / SPACEtomo
  Smart Parallel Automated Cryo Electron tomography
  ☆23Updated 4 months ago
• kdd-ubc / MorphOT
  Transport-based interpolation of cryo-EM density maps for ChimeraX
  ☆12Updated 4 years ago
• bionanopatterning / scNodes
  ☆14Updated 2 months ago
• rosalindfranklininstitute / parakeet
  Phantom generator
  ☆23Updated 4 months ago
• cramerlab / warp
  ☆57Updated last year
• brisvag / blik
  Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
  ☆28Updated 3 weeks ago
• FrangakisLab / ArtiaX
  ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.
  ☆39Updated 9 months ago
• wan-lab-vanderbilt / TOMOMAN
  A set of MATLAB wrapper scripts to help with pre-processing of tomography data.
  ☆20Updated last year
• timothygrant80 / cisTEM
  ☆41Updated last month
• turonova / cryoCAT
  Contextual Analysis Tools for cryoET and subtomogram averaging
  ☆33Updated last week
• teamtomo / mdocfile
  SerialEM mdoc files as pandas dataframes
  ☆14Updated 5 months ago
• bio-phys / BioEM
  GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the …
  ☆11Updated 2 years ago
• bforsbe / OccuPy
  ☆19Updated last year
• salilab / imp
  The Integrative Modeling Platform
  ☆80Updated this week
• dtegunov / warp
  ☆16Updated 8 years ago
• bpowell122 / tomodrgn
  Neural networks to analyze structural heterogeneity in cryo-electron sub-tomograms
  ☆31Updated 5 months ago
• bionanopatterning / Ais
  ☆24Updated 2 weeks ago
• anmartinezs / pyseg_system
  De novo analysis for cryo-electron tomography
  ☆24Updated last year
• slaclab / cryoEM-notebooks
  repository of notebooks for cryoEM
  ☆14Updated 5 years ago
• teamtomo / imodmodel
  IMOD model files as pandas dataframes in Python
  ☆11Updated 6 months ago
• alexjnoble / VirtualIce
  Half-synthetic cryoEM micrograph generator that projects pdbs>mrcs onto existing buffer cryoEM micrographs
  ☆18Updated last year
• ZauggGroup / DeePiCt
  Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…
  ☆39Updated last year
• sklumpe / SerialFIB
  A Modular Platform for Streamlining Automated Cryo-FIB Workflows
  ☆25Updated 9 months ago
• czimaginginstitute / GCtfFind
  GPU accelerated software package for CTF estimation of cryoEM micrographs and cryoET tilt series
  ☆23Updated 7 months ago
• SMLC-NYSBC / ptolemy
  Public release of Ptolemy package for automated targeting of Cryo-EM grids
  ☆18Updated 9 months ago
• KudryashevLab / TomoBEAR
  TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…
  ☆28Updated 6 months ago
• 3dem / DynaMight
  Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset
  ☆31Updated 3 months ago
• AlphaCryo4D / AlphaCryo4D
  A deep manifold learning framework for 4D cryo-EM data processing for simultaneous determination of high-resolution structures and dynami…
  ☆17Updated 3 years ago
• StochasticAnalytics / emClarity
  ☆42Updated 3 months ago
• charbj / wiggle
  Graphical user interface to integrate cryoEM flexibility analyses with ChimeraX
  ☆24Updated last year