BioPandas / biopandas

Related projects ⓘ

Alternatives and complementary repositories for biopandas

• biotite-dev / biotite
  A comprehensive library for computational molecular biology
  ☆680Updated this week
• nglviewer / nglview
  Jupyter widget to interactively view molecular structures and trajectories
  ☆822Updated 2 months ago
• williamgilpin / pypdb
  A Python API for the RCSB Protein Data Bank (PDB)
  ☆314Updated 3 months ago
• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆340Updated 2 years ago
• prody / ProDy
  A Python Package for Protein Dynamics Analysis
  ☆434Updated this week
• LPDI-EPFL / masif
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
  ☆595Updated 5 months ago
• a-r-j / graphein
  Protein Graph Library
  ☆1,041Updated 3 weeks ago
• deepchem / DeepLearningLifeSciences
  Example code from the book "Deep Learning for the Life Sciences"
  ☆357Updated 3 years ago
• sacdallago / bio_embeddings
  Get protein embeddings from protein sequences
  ☆466Updated last year
• soedinglab / hh-suite
  Remote protein homology detection suite.
  ☆542Updated 2 weeks ago
• chembl / chembl_webresource_client
  Official Python client for accessing ChEMBL API
  ☆379Updated 8 months ago
• oddt / oddt
  Open Drug Discovery Toolkit
  ☆419Updated last year
• yangkky / Machine-learning-for-proteins
  Listing of papers about machine learning for proteins.
  ☆1,537Updated 5 months ago
• soedinglab / MMseqs2
  MMseqs2: ultra fast and sensitive search and clustering suite
  ☆1,450Updated this week
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆492Updated 3 months ago
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆241Updated last week
• pablo-arantes / making-it-rain
  Cloud-based molecular simulations for everyone
  ☆393Updated 3 weeks ago
• steineggerlab / foldseek
  Foldseek enables fast and sensitive comparisons of large structure sets.
  ☆831Updated last week
• nadavbra / protein_bert
  ☆494Updated 11 months ago
• cokelaer / bioservices
  Access to Biological Web Services from Python.
  ☆284Updated last month
• gnina / gnina
  A deep learning framework for molecular docking
  ☆632Updated last month
• pharmai / plip
  Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme …
  ☆464Updated 3 months ago
• pb3lab / ibm3202
  Google Colab Tutorials for IBM3202
  ☆245Updated 2 weeks ago
• songlab-cal / tape
  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…
  ☆662Updated last year
• openmm / pdbfixer
  PDBFixer fixes problems in PDB files
  ☆494Updated last week
• lightdock / lightdock
  Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
  ☆307Updated 10 months ago
• haddocking / pdb-tools
  A dependency-free cross-platform swiss army knife for PDB files.
  ☆389Updated 2 months ago
• Pymol-Scripts / Pymol-script-repo
  Collected scripts for Pymol
  ☆448Updated last month
• scikit-bio / scikit-bio
  scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resourc…
  ☆896Updated this week
• YoshitakaMo / localcolabfold
  ColabFold on your local PC
  ☆609Updated 2 weeks ago