Alternatives and similar repositories for automated-clinical-coding-llm

Users that are interested in automated-clinical-coding-llm are comparing it to the libraries listed below

• drivendataorg / snomed-ct-entity-linking
  Winners of the SNOMED CT Entity Linking Challenge
  ☆43Updated last year
• kaneplusplus / icd-10-cm-embedding
  LLM Embeddings for ICD 10 Data
  ☆62Updated last year
• CogStack / MedCATtutorials
  General tutorials for the setup and use of MedCAT.
  ☆41Updated 7 months ago
• StefanoTrv / simple_icd_10_CM
  A simple python library for ICD-10-CM codes
  ☆81Updated 4 months ago
• MadhumitaSushil / OncLLMExtraction
  Expert-Curated Oncology Reports to Advance Language Model Inference
  ☆31Updated last year
• obi-ml-public / ehr_deidentification
  Robust de-identification of medical notes using transformer architectures
  ☆57Updated 3 years ago
• AIM-Harvard / SDoH
  Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…
  ☆49Updated 2 years ago
• ncbi-nlp / TrialGPT
  Code and data for TrialGPT.
  ☆139Updated 11 months ago
• StanfordMIMI / clin-summ
  Clinical text summarization by adapting large language models
  ☆155Updated last year
• uf-hobi-informatics-lab / GatorTron
  all scripts used in gatortron project
  ☆130Updated 2 years ago
• KatherLab / LLMAnonymizer-Publication
  Anonymize Medical Documents using LLMs
  ☆59Updated last year
• CogStack / Foresight
  Deep Generative Modelling of Patient Timelines using Electronic Health Records
  ☆70Updated 7 months ago
• Yale-LILY / Ascle
  A Python Natural Language Processing Toolkit for Medical Text Generation
  ☆84Updated 7 months ago
• MiuLab / PLM-ICD
  PLM-ICD: Automatic ICD Coding with Pretrained Language Models
  ☆76Updated 2 years ago
• rcolinp / clinical_informatics_umls
  An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…
  ☆48Updated last year
• IHTSDO / llm-chain-entity-extraction
  ☆28Updated 2 weeks ago
• nlpie-research / umls-to-snomed-icd10-mapper
  UMLS to SNOMED CT and ICD-10 mapping tool: A Python script for generating JSON files containing mappings between UMLS CUIs and SNOMED CT …
  ☆15Updated 2 years ago
• clinical-ai / omop-etl
  ETL Tool for converting datasets to OMOP CDM
  ☆35Updated 3 years ago
• som-shahlab / ehrshot-benchmark
  A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)
  ☆209Updated 7 months ago
• 3mcloud / MDACE
  The project was to build and release the first publicly available code evidence dataset called MDACE on a subset of the MIMIC-III clinica…
  ☆29Updated 2 years ago
• acadTags / Awesome-medical-coding-NLP
  A collection of papers on automated medical coding from free-texts
  ☆151Updated last year
• lisavirginia / clinical-abbreviations
  ☆66Updated 4 years ago
• OHDSI / Criteria2Query
  [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…
  ☆73Updated this week
• StefanoTrv / simple_icd_10
  A simple python library for ICD-10 codes
  ☆44Updated 7 months ago
• BCHSI / philter-ucsf
  Open source clinical text de-identification
  ☆146Updated last year
• mghassem / medicationCategories
  Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…
  ☆29Updated 8 years ago
• cthoyt / umls_downloader
  Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
  ☆41Updated last year
• apache / ctakes
  Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.
  ☆112Updated last week
• ZhiGroup / Med-BERT
  Med-BERT, contextualized embedding model for structured EHR data
  ☆312Updated last year
• som-shahlab / medalign
  MedAlign is a clinician-generated dataset for instruction following with electronic medical records.
  ☆97Updated 8 months ago