abchapman93 / VA_COVID-19_NLP_BSV
An NLP pipeline for COVID-19 surveillance used in the Department of Veterans Affairs Biosurveillance.
☆15Updated 2 years ago
Alternatives and similar repositories for VA_COVID-19_NLP_BSV:
Users that are interested in VA_COVID-19_NLP_BSV are comparing it to the libraries listed below
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated last year
- ☆98Updated last year
- Classes for ClinicalTrials.gov related projects☆47Updated 5 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 2 years ago
- ☆22Updated 2 years ago
- A convolutional neural network model for relation extraction.☆13Updated last year
- Clinical NLP workshop for ODSC☆39Updated 5 years ago
- Load all concepts and relationships from UMLS into a Neo4j database☆11Updated 4 years ago
- Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning☆43Updated 2 years ago
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆21Updated 4 years ago
- Automatically exported from code.google.com/p/negex☆36Updated 2 years ago
- NLP system for identifying patient housing status in Veteran Affairs☆10Updated last year
- ACT COVID Ontology☆15Updated 3 years ago
- A rule-based Python module for spitting documents into sections.☆12Updated 4 years ago
- An Interactive Tool for Natural Language Processing on Clinical Text☆22Updated 3 years ago
- EpiTator annotates epidemiological information in text documents. It is the natural language processing framework that powers GRITS and E…☆41Updated 2 years ago
- Automatic classification of medical patient discharge notes into standard disease labels, using deep learning models☆30Updated 6 years ago
- MedXN is a medication normalization system built upon Apache UIMA framework.☆22Updated last year
- An information extraction system for free-text eligibility criteria☆36Updated 6 years ago
- cTAKES Python API interface for the Default Clinical Pipeline☆15Updated 6 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆22Updated 4 years ago
- Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.☆44Updated last year
- A fine-tuned BERT using EHR notes.☆14Updated 5 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆79Updated this week
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- clinical free text de-identification software☆41Updated 6 years ago
- Web interface that allows users to perform computer-assisted text annotation☆16Updated 2 years ago
- ☆64Updated 3 years ago
- a Python tool to extract and structure numeric lab test comparison statements from text☆22Updated last year
- Discovering Related Clinical Concepts using Large Amounts of Clinical Notes. An unsupervised graphical approach to mine related concepts …☆26Updated 7 years ago