soda-inria / causal_ehr_mimicLinks
Code repository for the paper : Causal thinking for decision making on Electronic Health Records: why and how
☆18Updated last year
Alternatives and similar repositories for causal_ehr_mimic
Users that are interested in causal_ehr_mimic are comparing it to the libraries listed below
Sorting:
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆33Updated 3 weeks ago
- UniHPF : Universal Healthcare Predictive Framework with Zero Domain Knowledge☆13Updated last year
- Source code for a comprehensive analysis of MTL over EHR timeseries data.☆37Updated 2 years ago
- Taking off-the-shelf HuggingFace models and training them on EHR data☆24Updated 2 months ago
- ☆37Updated last year
- Repository for the paper 'MDS-ED: Multimodal Decision Support in the Emergency Department – a benchmark dataset based on MIMIC-IV'.☆18Updated last month
- Limited automatic tabular ML pipelines for generic MEDS datasets.☆17Updated 3 weeks ago
- A Multimodal Transformer: Fusing Clinical Notes With Structured EHR Data for Interpretable In-Hospital Mortality Prediction☆31Updated 2 years ago
- A simple set of MEDS polars-based ETL and transformation functions☆31Updated 3 weeks ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆35Updated 2 weeks ago
- DescEmb - Unifying Heterogenous Electronic Health Records Systems via Text-Based Code Embedding☆21Updated last month
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆26Updated last week
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆24Updated 2 years ago
- circEWS public code☆69Updated 7 months ago
- ☆14Updated 9 months ago
- ☆33Updated 2 years ago
- Sample end-to-end pipeline over MIMIC-IV demonstrating the Event Stream GPT code base.☆16Updated last year
- A collection of ETLs from common data formats to Medical Event Data Standard☆29Updated last month
- General Healthcare Predictive Framework☆17Updated 2 months ago
- Repository for the HiRID ICU Benchmark (HiB) project☆56Updated last year
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆20Updated 2 years ago
- [NeurIPS 2024 D&B] Official code for "EHRNoteQA: An LLM Benchmark for Real-World Clinical Practice Using Discharge Summaries"☆32Updated 4 months ago
- Prompting Large Language Models for Zero-Shot Clinical Prediction with Structured Longitudinal Electronic Health Record Data☆23Updated last year
- Code repository to create the MIMIC-CDM Dataset.☆33Updated 3 months ago
- Code repository for the framework to engage in clinical decision making task using the MIMIC-CDM dataset.☆37Updated 3 months ago
- ☆24Updated 5 years ago
- Patient Code & Text Representation Learning☆20Updated 2 years ago
- Code for "A Data-Centric Approach To Generate Faithful and High Quality Patient Summaries with Large Language Models"☆14Updated 9 months ago
- ☆25Updated 4 months ago
- Dataset for Checking Consistency between Unstructured Notes and Structured Tables in Electronic Health Records☆21Updated 9 months ago