Alternatives and similar repositories for SomaDataIO

Users that are interested in SomaDataIO are comparing it to the libraries listed below

• Olink-Proteomics / OlinkRPackage
  Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users…
  ☆121Updated last week
• Bioconductor / Contributions
  Contribute Packages to Bioconductor
  ☆143Updated 7 months ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆93Updated 9 months ago
• cmap / cmapR
  Tools for manipulating annotated data matrices
  ☆91Updated 4 years ago
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆166Updated 4 months ago
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆68Updated 2 weeks ago
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆107Updated 2 years ago
• HelenaLC / CATALYST
  Cytometry dATa anALYsis Tools
  ☆69Updated 2 weeks ago
• tidyomics / tidybulk
  Brings bulk and pseudobulk transcriptomics to the tidyverse
  ☆174Updated last week
• stemangiola / tidyseurat
  Seurat meets tidyverse. The best of both worlds.
  ☆159Updated last week
• netZoo / netZooR
  netZooR is a network biology package implemented in R.
  ☆114Updated 2 months ago
• Bioconductor / CSAMA
  Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
  ☆94Updated last year
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆97Updated 3 years ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆92Updated 11 months ago
• seandavi / GEOquery
  The bridge between the NCBI Gene Expression Omnibus and Bioconductor
  ☆100Updated 2 months ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆64Updated 4 years ago
• kordastilab / ImmunoCluster
  ☆27Updated 4 years ago
• csoneson / conquer_comparison
  Code for evaluation of differential expression methods in single-cell RNA-seq data
  ☆112Updated 5 years ago
• slowkow / tftargets
  Human transcription factor target genes from 6 databases in convenient R format.
  ☆86Updated 7 years ago
• hawn-lab / workshops_UW_Seattle
  ☆26Updated 4 years ago
• MangiolaLaboratory / sccomp
  Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R
  ☆112Updated this week
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆83Updated 3 months ago
• arnesmits / DEP
  DEP package
  ☆28Updated 3 years ago
• jokergoo / InteractiveComplexHeatmap
  Make Interactive Complex Heatmaps
  ☆138Updated last year
• markrobinsonuzh / cytofWorkflow
  ☆16Updated last year
• tidyomics / tidyomics
  Easily install and load packages from the tidyomics ecosystem
  ☆70Updated 3 weeks ago
• const-ae / glmGamPoi
  Fit Gamma-Poisson Generalized Linear Models Reliably
  ☆117Updated 8 months ago
• tidyomics / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆36Updated last week
• Bioconductor / OrchestratingSingleCellAnalysis
  Content for the OSCA Book.
  ☆66Updated 2 years ago
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆47Updated 5 months ago