PacBio common models, CLI tool contract interface and SMRT Link Service Interface
☆11Oct 20, 2023Updated 3 years ago
Alternatives and similar repositories for pbcommand
Users that are interested in pbcommand are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Jun 29, 2017Updated 9 years ago
- Demand Calculator and Node Manager Library☆10Updated this week
- a simple lightweight workflow engine for data analysis scripting☆11Sep 5, 2019Updated 7 years ago
- Load genomic BAM files using Apache Spark☆21Jun 17, 2018Updated 8 years ago
- Source code for running GigaDB☆14Jul 1, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- NanoVG Haskell bindings☆22May 17, 2023Updated 3 years ago
- CNV Rapid Aberration Detection And Reporting☆13Mar 2, 2021Updated 5 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆32Aug 16, 2017Updated 9 years ago
- reference implementation of GA4GH WGS Quality Control Standards☆12Oct 20, 2026Updated last week
- ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads☆15Apr 30, 2019Updated 7 years ago
- CppStreams is a data pipeline library for C++☆14Aug 1, 2015Updated 11 years ago
- Cost-efficient genome-wide gene expression profiling☆16Dec 2, 2022Updated 3 years ago
- A C++14 library for NGS data formats☆39Aug 5, 2019Updated 7 years ago
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.☆12Mar 3, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- Lightweight C++ library for reading FASTA and FASTQ files.☆12Feb 16, 2019Updated 7 years ago
- interactive visualization of single-cell transcriptomes☆11Mar 10, 2026Updated 7 months ago
- Maze generation and rendering using Python.☆17Jun 10, 2014Updated 12 years ago
- ☆26Oct 31, 2025Updated last year
- Neuroimaging in R Talk☆10Apr 9, 2016Updated 10 years ago
- Kraken2 Server☆23Nov 24, 2025Updated 11 months ago
- Code and analysis for the 1000 tools paper☆11Nov 12, 2021Updated 4 years ago
- ISOform-guided prediction of epiTOPEs in cancer☆13Apr 10, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆11Dec 11, 2025Updated 10 months ago
- A Flask extension that wraps pycflare to provide access to CloudFlare's API.☆11Oct 30, 2021Updated 5 years ago
- The overall aim of these 4OSS in the shape of training materials will contribute to make research software FAIR.☆23Sep 9, 2020Updated 6 years ago
- This repository is for code to run examples and generate the figures from the lectures notes from the module Advanced Mathematical Biolog…☆10Nov 14, 2025Updated 11 months ago
- Exploring Isoform-specific interactions☆13Jul 23, 2026Updated 3 months ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆18Updated this week
- Map genetic variants and protein positions to protein interfaces in 3D☆12Sep 22, 2023Updated 3 years ago
- A server interface to GHC.☆18Oct 11, 2014Updated 12 years ago
- ☆13Feb 29, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- TCGA Splicing Variation Database Cancer Splicing Variant Database Cancer alternative splicing database☆14Jun 9, 2025Updated last year
- Machine Learning and Deep Learning with examples.☆11Feb 26, 2019Updated 7 years ago
- Plot CNV data with a genome viewer in R☆16Apr 5, 2017Updated 9 years ago
- JSON validator derived from AJV supporting ontology and taxonomy validation.☆22May 22, 2025Updated last year
- Miscellaneous scripts for applications of PacBio systems☆27Apr 19, 2022Updated 4 years ago
- It's a methods repository!☆10Oct 9, 2026Updated 3 weeks ago
- Scripts for analyzing data displayed and deposited on the long non-coding RNA knowledgebase (lncRNAKB)☆11May 5, 2021Updated 5 years ago