Alternatives and similar repositories for nnInteractive

Users that are interested in nnInteractive are comparing it to the libraries listed below

• MIC-DKFZ / napari-nninteractive
  ☆73Updated last month
• arcadelab / FastSAM3D
  Code for "FastSAM3D: An Efficient Segment Anything Model for 3D Volumetric Medical Images"
  ☆94Updated 2 months ago
• coendevente / SlicerNNInteractive
  A 3D Slicer extension for efficient segmentation with nnInteractive.
  ☆66Updated this week
• bwittmann / vesselFM
  A foundation model for universal 3D blood vessel segmentation. Paper accepted @ CVPR25.
  ☆65Updated last week
• mazurowski-lab / SegmentAnyBone
  SegmentAnyBone: A Universal Model that Segments Any Bone at Any Location on MRI
  ☆86Updated 5 months ago
• Project-MONAI / VISTA
  MONAI Versatile Imaging Segmentation and Annotation
  ☆193Updated 3 weeks ago
• uncbiag / uniGradICON
  uniGradICON: A Foundation Model for Medical Image Registration (MICCAI 2024)
  ☆127Updated last week
• Jingnan-Jia / segmentation_metrics
  A package to compute medical segmentation metrics.
  ☆162Updated 10 months ago
• neheller / kits23
  The official repository of the 2023 Kidney Tumor Segmentation Challenge (KiTS23)
  ☆108Updated 3 weeks ago
• Sikerdebaard / dcmrtstruct2nii
  DICOM RT-Struct to mask
  ☆101Updated last year
• MIC-DKFZ / LongiSeg
  ☆19Updated last week
• bwittmann / transoar
  A 3D medical Detection Transformer library. Papers accepted @ MIDL22 & MELBA23/02.
  ☆62Updated 10 months ago
• UMEssen / SALT
  Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hiera…
  ☆79Updated 8 months ago
• mazurowski-lab / SlicerSegmentWithSAM
  3D Slicer extension for Segment Anything Model (SAM) developed by Meta
  ☆59Updated this week
• MIRACLE-Center / CTSpine1K
  A Large-Scale Dataset for Spinal Vertebrae Segmentation in Computed Tomography
  ☆170Updated last week
• MIC-DKFZ / LesionLocator
  LesionLocator is a framework for zero-shot lesion segmentation and longitudinal tumor tracking in 3D full-body imaging.
  ☆41Updated last month
• KitwareMedical / SlicerNNUnet
  3D Slicer nnUNet integration to streamline usage for nnUNet based AI extensions.
  ☆34Updated 4 months ago
• pyplati / platipy
  Processing Library and Analysis Toolkit for Medical Imaging in Python
  ☆132Updated last month
• bowang-lab / MedSAMSlicer
  3D Slicer Plugin for Segment anything in medical images
  ☆233Updated last month
• StanfordMIMI / Comp2Comp
  Computed tomography to body composition (Comp2Comp).
  ☆86Updated 3 weeks ago
• mazurowski-lab / segment-anything-medical-evaluation
  Code for "Segment Anything Model for Medical Image Analysis: an Experimental Study" in Medical Image Analysis
  ☆161Updated 11 months ago
• hhaentze / MRSegmentator
  ☆126Updated last month
• ENHANCE-PET / MOOSE
  MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemi…
  ☆238Updated this week
• rachellea / ct-volume-preprocessing
  End-to-end Python CT volume preprocessing pipeline to convert raw DICOMs into clean 3D numpy arrays for ML. From paper Draelos et al. "Ma…
  ☆67Updated 4 years ago
• neel-dey / anatomix
  [ICLR 2025] Learning General-purpose Biomedical Volume Representations using Randomized Synthesis
  ☆73Updated last month
• MIC-DKFZ / dynamic-network-architectures
  ☆105Updated 3 weeks ago
• AIM-Harvard / foundation-cancer-image-biomarker
  [Nature Machine Intelligence 2024] Code and evaluation repository for the paper
  ☆110Updated 3 months ago
• StanfordMIMI / Merlin
  Merlin is a 3D VLM for computed tomography that leverages both structured electronic health records (EHR) and unstructured radiology repo…
  ☆102Updated last month
• lassoan / SlicerMONAIAuto3DSeg
  Extension for 3D Slicer for running MONAI Auto3DSeg models
  ☆87Updated 3 months ago
• giesekow / deepvesselnet
  Implementation of the DeepVesselNet deep learning network
  ☆149Updated last year