A Heterogeneous Graph Transformer (HGT)-based model for protein function prediction using biological knowledge graphs and protein language models
☆18Jan 27, 2026Updated last month
Alternatives and similar repositories for ProtHGT
Users that are interested in ProtHGT are comparing it to the libraries listed below
Sorting:
- Python Client Library for the G2P Portal API☆15Aug 14, 2025Updated 7 months ago
- Membrane protein builder and parameterizer☆19Sep 1, 2024Updated last year
- DeepGO with Fuzzy DL☆33Sep 19, 2022Updated 3 years ago
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Sep 9, 2025Updated 6 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Mar 25, 2024Updated last year
- Method for constructing embeddings of GO terms.☆14Nov 25, 2021Updated 4 years ago
- Transformer for protein function prediction (version 2)☆15Jan 8, 2026Updated 2 months ago
- InterLabelGO+: Unraveling label correlations in protein function prediction☆15Aug 5, 2025Updated 7 months ago
- ☆54Sep 11, 2024Updated last year
- ☆14Nov 1, 2017Updated 8 years ago
- Precision-Recall based assessment for CAFA☆15Dec 6, 2019Updated 6 years ago
- ☆17Dec 9, 2024Updated last year
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆12Dec 29, 2020Updated 5 years ago
- ☆11May 31, 2022Updated 3 years ago
- SubPEx (Sub-Pocket Explorer) is a tool to enhance ensemble (multiple-receptor/relaxed-complex) virtual screening. It uses weighted ensemb…☆18Jun 30, 2025Updated 8 months ago
- UPDATE: All future changes will be pushed to https://github.com/HICAI-ZJU/PromptProtein☆15Apr 23, 2023Updated 2 years ago
- cryoID identifies the protein(s) in unknown near-atomic resolution cryoEM density maps from a pool of candidate proteins.☆13Dec 1, 2019Updated 6 years ago
- ☆14Jan 31, 2019Updated 7 years ago
- ☆11Nov 22, 2024Updated last year
- Generate customized voxel representations of protein-ligand complexes using GPU.☆11Sep 8, 2025Updated 6 months ago
- Covariance Estimation and Denoising for Cryo-EM Images (Covariance Wiener Filtering)☆14Aug 8, 2017Updated 8 years ago
- Python implementation of 3D Zernike moments with NumPy☆16Sep 28, 2024Updated last year
- A 30+ node flowchart for selecting the right statistical test for evaluating experimental data.☆12Dec 19, 2025Updated 3 months ago
- ☆13Jul 17, 2025Updated 8 months ago
- Scripts and sources of the block-based reconstruction/refinement in cryo-EM☆15Sep 22, 2025Updated 5 months ago
- Protein language models-assisted optimization of a uracil-N-glycosylase variant enables programmable T-to-G and T-to-C base editing☆18Jun 6, 2024Updated last year
- ☆24Sep 3, 2024Updated last year
- ☆14Jul 14, 2023Updated 2 years ago
- ☆19Oct 14, 2018Updated 7 years ago
- Function prediction using a deep ontology-aware classifier☆86Nov 21, 2022Updated 3 years ago
- ☆22Nov 26, 2025Updated 3 months ago
- In-silico design pipeline for evaluating protein structure diffusion models.☆30Jun 25, 2024Updated last year
- JODConverter automates document conversions using LibreOffice/OpenOffice.org☆12Jul 9, 2025Updated 8 months ago
- Multi-label subcellular localization and sorting signal prediction based on protein foundation models☆24Jan 12, 2026Updated 2 months ago
- Guiding directed protein evolution with Bayesian Optimization - First Steps☆16Sep 13, 2020Updated 5 years ago
- UCBShift is a program for predicting chemical shifts for backbone atoms and β-carbon of a protein in solution. It utilizes a machine lear…☆24Jun 10, 2025Updated 9 months ago
- ☆11Feb 18, 2025Updated last year
- Useful Collective Variables for OpenMM☆17May 9, 2024Updated last year
- Python Toolbox For Rosetta Silent Files Processing☆16May 23, 2019Updated 6 years ago