BIC-MNI / minc-toolkit-v2View external linksLinks
Version 2 of the minc-toolkit, uses tools based on ITK version 4.x
☆53May 27, 2025Updated 8 months ago
Alternatives and similar repositories for minc-toolkit-v2
Users that are interested in minc-toolkit-v2 are comparing it to the libraries listed below
Sorting:
- libminc is the core library and API of the MINC toolkit☆19Feb 9, 2026Updated last week
- Basic minc-tools from former minc repository☆33Nov 28, 2024Updated last year
- Statistics for MINC volumes: A library to integrate voxel-based statistics for MINC volumes into the R environment. Supports getting and …☆25Dec 12, 2025Updated 2 months ago
- NiiStat is a set of Matlab scripts for analyzing neuroimaging data from clinical populations☆32Jul 27, 2020Updated 5 years ago
- CIVET Installer☆30Jan 29, 2022Updated 4 years ago
- OBSOLETE: Medical Image NetCDF, this package is now split into two parts: libminc ( https://github.com/BIC-MNI/libminc ) and minc-tools (…☆36Nov 2, 2016Updated 9 years ago
- PREEMACS. pipeline for PREprocessing and Extraction of the MACaque brain Surface☆17May 22, 2024Updated last year
- An ansible playbook to deploy a complete standalone neuroimaging workstation☆26Oct 27, 2025Updated 3 months ago
- Documentation for every thing, everything documented☆43Jan 15, 2026Updated last month
- GNU Octave library for connectivity analysis in large fMRI datasets☆30Oct 11, 2022Updated 3 years ago
- Jupyter Notebook that illustrates how to query, package, and download data from NIMH Data Archive☆33Mar 31, 2021Updated 4 years ago
- VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.☆75Dec 27, 2025Updated last month
- Multiple Automatically Generated Templates brain segmentation algorithm☆50Jun 18, 2024Updated last year
- PCA Model for Brain Extraction☆18Jan 2, 2019Updated 7 years ago
- Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data☆78Mar 17, 2021Updated 4 years ago
- Advanced Normalization Tools (ANTs)☆1,421Updated this week
- Subject-wise networks from structural MRI, both vertex- and voxel-wise features (thickness, GM density, curvature, gyrification)☆39Jan 29, 2026Updated 2 weeks ago
- Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software pac…☆54Jan 6, 2026Updated last month
- Tool for downloading ABCD_BIDS inputs and derivatives from the ABCD-BIDS NDA Collection 3165.☆24Aug 13, 2024Updated last year
- Progression Models for Repeated Measures☆12Aug 21, 2022Updated 3 years ago
- A General Rodent MRI Skull-Stripping Tool Based on Multi-Center Data☆10Dec 7, 2024Updated last year
- A variational Bayesian method for similarity learning in non-rigid image registration (CVPR 2022)☆20May 21, 2022Updated 3 years ago
- Neuroimaging analysis and visualization suite☆786Updated this week
- NeuroData's MRI to Graphs (m2g) - connectome estimation package and pipeline☆64Apr 13, 2024Updated last year
- A set of tools for processing Quantitative MR Images☆64Jul 14, 2025Updated 7 months ago
- A Python implementation of 'dual-coding'☆42Apr 24, 2024Updated last year
- Metaproject uniting all the available minc tools☆40Aug 9, 2023Updated 2 years ago
- Python barebones for uProbe-1 ultrasound probe acquisitions☆15Nov 11, 2017Updated 8 years ago
- MATLAB code for reading and writing CIFTI connectivity files☆69Oct 19, 2024Updated last year
- Trained TensorFlow models for 3D image processing☆27Jan 31, 2024Updated 2 years ago
- Exercises for 2015 Berkeley practical neuroimaging class☆26Nov 17, 2015Updated 10 years ago
- MarsBaR region of interest toolbox for SPM☆26Jan 23, 2025Updated last year
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆190Jan 8, 2026Updated last month
- Atrophy simulation from Inria Asclepios☆11Mar 6, 2020Updated 5 years ago
- Script for downloading S3 links from Amazon Web Service☆12Apr 24, 2019Updated 6 years ago
- Bootstrapped Analysis of Stable Clusters- A semi-automated fMRI individual and group level functional parcellation technique☆26Oct 11, 2019Updated 6 years ago
- Connectome Computation System☆82Sep 12, 2024Updated last year
- SliceTracker is a 3D Slicer extension to support the workflow of MR-guided prostate biopsies.☆13Oct 14, 2020Updated 5 years ago
- ☆17Jun 13, 2024Updated last year