Alternatives and similar repositories for minc-tools

Users that are interested in minc-tools are comparing it to the libraries listed below

• BIC-MNI / minc-toolkit-v2
  Version 2 of the minc-toolkit, uses tools based on ITK version 4.x
  ☆53Updated this week
• BIC-MNI / minc
  OBSOLETE: Medical Image NetCDF, this package is now split into two parts: libminc ( https://github.com/BIC-MNI/libminc ) and minc-tools (…
  ☆35Updated 8 years ago
• BIC-MNI / libminc
  libminc is the core library and API of the MINC toolkit
  ☆19Updated 2 months ago
• jeffduda / NeuroBattery
  Using ANTs to process multiple MR image types for a single subject
  ☆24Updated 7 years ago
• CoBrALab / MAGeTbrain
  Multiple Automatically Generated Templates brain segmentation algorithm
  ☆49Updated 10 months ago
• poldracklab / pydeface
  defacing utility for MRI images
  ☆119Updated last year
• cookpa / pipedream
  PipeDream - open source neuroimaging pipelines
  ☆16Updated 5 years ago
• sammba-mri / sammba-mri
  small mammals brain MRI
  ☆16Updated last year
• Deep-MI / BrainPrint-legacy
  Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)
  ☆20Updated 4 years ago
• neurolabusc / NiiStat
  NiiStat is a set of Matlab scripts for analyzing neuroimaging data from clinical populations
  ☆31Updated 4 years ago
• NIRALUser / DTIPrep
  DTIPrep performs a "Study-specific Protocol" based automatic pipeline for DWI/DTI quality control and preparation
  ☆19Updated 4 years ago
• DevelopingHCP / structural-pipeline
  dHCP structural pipeline
  ☆16Updated 3 years ago
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆69Updated last week
• layerfMRI / LAYNII
  Stand alone fMRI software suite for layer-fMRI analyses.
  ☆91Updated this week
• SlicerDMRI / SlicerDMRI
  Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
  ☆80Updated 2 months ago
• neurolabusc / Clinical
  Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)
  ☆46Updated 3 years ago
• nipreps / niworkflows
  Common workflows for MRI (anatomical, functional, diffusion, etc)
  ☆96Updated last week
• freesurfer / surfa
  Python utilities for medical image and surface-based analysis
  ☆29Updated this week
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆67Updated last year
• TimVanMourik / Porcupine
  Visual programming for neuroimaging analysis
  ☆63Updated 5 years ago
• jlohmeier / atlasBREX
  atlasBREX: Automated averaged template-derived brain extraction in animal MRI
  ☆16Updated last year
• Qoala-T / QC
  Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
  ☆76Updated 4 years ago
• moloney / dcmstack
  DICOM to Nifti conversion with meta data preservation
  ☆75Updated 5 months ago
• braincharter / vasculature
  Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space
  ☆49Updated 2 years ago
• bbfrederick / rapidtide
  rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data
  ☆78Updated last week
• nighres / nighres
  Processing tools for high-resolution neuroimaging
  ☆71Updated 5 months ago
• neuronets / nobrainer
  A framework for developing neural network models for 3D image processing.
  ☆163Updated last month
• UCL / PETPVC
  Partial Volume Correction in PET
  ☆59Updated 5 months ago
• scilus / tractoflow
  TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity
  ☆56Updated 7 months ago
• nipy / nilabels
  Tools to automate simple manipulations and measurements of medical images and segmentations in nifti format.
  ☆21Updated 10 months ago