Mouse-Imaging-Centre / pydpiper
Python code for flexible pipeline control
☆26Updated 2 years ago
Alternatives and similar repositories for pydpiper
Users that are interested in pydpiper are comparing it to the libraries listed below
Sorting:
- PipeDream - open source neuroimaging pipelines☆16Updated 5 years ago
- Multiple Automatically Generated Templates brain segmentation algorithm☆49Updated 10 months ago
- OBSOLETE: Medical Image NetCDF, this package is now split into two parts: libminc ( https://github.com/BIC-MNI/libminc ) and minc-tools (…☆35Updated 8 years ago
- Documentation for ANTs☆16Updated 10 years ago
- brainCOLOR project: brain image labeling protocol and optimal colormap designed for brain images☆16Updated 6 years ago
- rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data☆78Updated last week
- defacing utility for MRI images☆119Updated last year
- Guide to tutorial materials for ANTs/R☆46Updated 6 years ago
- VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.☆73Updated 10 months ago
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆30Updated last month
- atlasBREX: Automated averaged template-derived brain extraction in animal MRI☆16Updated last year
- Neuroimaging widgets for jupyter notebooks☆87Updated 2 years ago
- Lesion Identification with Neighborhood Data Analysis☆21Updated 5 years ago
- Python utilities for medical image and surface-based analysis☆29Updated this week
- Fast regression and mediation analysis of vertex or voxel MRI data with TFCE☆30Updated last year
- DICOM to Nifti conversion with meta data preservation☆75Updated 5 months ago
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆67Updated last year
- Implementation of the White Matter Query Language and associated tools for dMRI white matter tract extraction and analysis☆29Updated 3 weeks ago
- 3D MRI data exploration and segmentation tool.☆74Updated last year
- BROCCOLI: Software for Fast fMRI Analysis on Many-Core CPUs and GPUs☆117Updated 4 years ago
- A framework for developing neural network models for 3D image processing.☆163Updated last month
- SPM Containers (Docker & Singularity)☆21Updated 6 months ago
- FSL-R Interface package☆41Updated 3 months ago
- Tools to automate simple manipulations and measurements of medical images and segmentations in nifti format.☆21Updated 10 months ago
- Preprocessing scripts for neuro imaging☆108Updated last year
- A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!☆92Updated 2 months ago
- TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity☆56Updated 7 months ago
- Quickshear Defacing for Neuroimages☆11Updated 2 years ago
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆96Updated last week
- Using ANTs to process multiple MR image types for a single subject☆24Updated 7 years ago