CCI-Bonn / HD-SEQ-IDLinks
HD-SEQ-ID: HD Sequence Identifier for brain MRI
☆16Updated last year
Alternatives and similar repositories for HD-SEQ-ID
Users that are interested in HD-SEQ-ID are comparing it to the libraries listed below
Sorting:
- Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.☆95Updated 3 months ago
- MONAIViz - 3D Slicer Extension☆24Updated 3 months ago
- BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Comp…☆58Updated 2 months ago
- A Foundational Keypoint Model for Robust and Flexible Brain MRI Registration☆53Updated 5 months ago
- ☆121Updated 3 months ago
- Computed tomography to body composition (Comp2Comp).☆103Updated this week
- ☆145Updated 3 weeks ago
- [Nature Machine Intelligence 2024] Code and evaluation repository for the paper☆131Updated 10 months ago
- MIST: A simple and scalable end-to-end framework for 3D medical imaging segmentation.☆52Updated last week
- Neural Pre Processing is an end-to-end weakly supervised learning approach for converting raw head MRI images to intensity-normalized, sk…☆31Updated last year
- Automated processing of MRI in neuro-oncology (combining HD-BET, image co-registration, and HD-GLIO in one container)☆32Updated 3 years ago
- TotalSegmentator packaged as an AIDE Application, based on the MONAI Application Package (MAP) standard.☆32Updated last year
- medigan - A Python Library of Pretrained Generative Models for Medical Image Synthesis☆191Updated last year
- Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterat…☆80Updated last month
- Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.☆84Updated last month
- Precision medicine toolbox☆70Updated last year
- SegmentAnyBone: A Universal Model that Segments Any Bone at Any Location on MRI☆115Updated last year
- End-to-end Python CT volume preprocessing pipeline to convert raw DICOMs into clean 3D numpy arrays for ML. From paper Draelos et al. "Ma…☆74Updated 5 years ago
- CT-FM: A 3D Image-Based Foundation Model for Computed Tomography☆61Updated 10 months ago
- Brain Segmentation with MONAI and Dynamic Unet (nn-unet)☆36Updated last month
- Slicer3D extension for rating using Likert-type score Deep-learning generated segmentations, with segment editor functionality. Created t…☆26Updated 6 months ago
- Stores the MHub models dockerfiles and scripts.☆10Updated 8 months ago
- ☆26Updated last month
- Transparent and reproducible medical image processing pipelines in Python.☆56Updated 3 weeks ago
- DICOM RT-Struct to mask☆102Updated last year
- Sparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imag…☆61Updated 11 months ago
- The easiest tool for experimenting with radiomics features.☆41Updated last year
- Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hiera…☆81Updated last year
- [ICLR 2025] Learning General-purpose Biomedical Volume Representations using Randomized Synthesis☆89Updated 2 weeks ago
- LesionLocator is a framework for zero-shot lesion segmentation and longitudinal tumor tracking in 3D full-body imaging.☆80Updated 3 weeks ago