Adaptive tokenization for proteins
☆20Mar 4, 2026Updated 5 months ago
Alternatives and similar repositories for apt
Users that are interested in apt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆39Nov 23, 2025Updated 8 months ago
- Environment for developing substructure-aware protein models☆16Mar 26, 2026Updated 4 months ago
- Shrinking Proteins with Diffusion☆30Jan 8, 2026Updated 7 months ago
- ICLR 2026☆21Nov 20, 2025Updated 8 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆127May 27, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13Jul 16, 2024Updated 2 years ago
- 🧬 Large-scale protein functional residue or fragment prediction benchmark. (ICLR 2026)☆24Apr 10, 2026Updated 3 months ago
- SE(3) Equivariant Augmented Coupling Flows. NeurIPS 2023.☆25Mar 22, 2024Updated 2 years ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- ☆30Apr 16, 2026Updated 3 months ago
- Conditionally Site-Independent Neural Evolution of Antibody Sequences (ICML '26)☆24May 9, 2026Updated 3 months ago
- ☆13Oct 15, 2023Updated 2 years ago
- Code for Entangled Schrödinger Bridge Matching☆21Nov 11, 2025Updated 8 months ago
- Equivariant layers for RC-complement symmetry in DNA sequence data☆13Feb 24, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.☆12Jun 13, 2017Updated 9 years ago
- Fast and Interpretable Protein Substructure Alignment via Optimal Transport (ICLR 2026)☆27Jun 26, 2026Updated last month
- Code repository for the SPOC tool for scoring binary AF-M predicitons.☆15Apr 27, 2025Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆155Apr 16, 2025Updated last year
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆24Sep 18, 2025Updated 10 months ago
- ☆28Dec 19, 2025Updated 7 months ago
- ☆19Jun 27, 2025Updated last year
- ☆21Mar 5, 2026Updated 5 months ago
- Phyla: Towards a Foundation Model for Phylogenetic Inference☆29Nov 20, 2025Updated 8 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Shows some of the ways molecule generation and optimization can go wrong☆17Jul 6, 2023Updated 3 years ago
- Associated code/pipeline for the publication "AI-assisted protein design to rapidly convert antibody sequences to intrabodies targeting d…☆15Feb 18, 2025Updated last year
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆127Apr 23, 2026Updated 3 months ago
- [ICLR'26] Towards All-Atom Foundation Models for Biomolecular Binding Affinity Prediction☆23Jul 9, 2026Updated last month
- Python rich client for visual protein Sequence to Structure Analysis☆22Mar 31, 2026Updated 4 months ago
- Community-maintained Boltz fork with bug fixes, broader compatibility, and CI.☆61Updated this week
- Discrete, Continuous, and Manifold Flow Matching with Splits and Deletions☆17Jun 22, 2026Updated last month
- ☆16Feb 28, 2025Updated last year
- ☆15Mar 5, 2026Updated 5 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆15Jul 14, 2025Updated last year
- Bridging Smoothed Molecular Dynamics and Score-Based Learning for Conformational Ensembles☆20May 16, 2026Updated 2 months ago
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 7 years ago
- Neurally-derived Potts models for protein design, inspired by dTERMen☆15Aug 23, 2022Updated 3 years ago
- The official repository for the ARSENAL model☆18Jul 3, 2026Updated last month
- ☆59Apr 7, 2026Updated 4 months ago
- Tensorflow implementation for the Class-wise Selective Rationalization☆14Feb 15, 2023Updated 3 years ago