yejinjkim / drug-repurposing-graph
Code repository for "Prioritizing Repurposable Drugs for SARS-CoV-2 using Deep Learning and Population-based Validation"
☆14Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for drug-repurposing-graph
- GraphCDR: A graph neural network method with contrastive learning for cancer drug response prediction☆25Updated 3 years ago
- ☆52Updated 5 years ago
- ☆62Updated last year
- ☆19Updated 4 years ago
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…☆32Updated 2 months ago
- ☆32Updated 3 years ago
- This repository provides an implementation of the DTiGEMSplus tool, a network-based method for computational Drug-Target Interaction pred…☆27Updated 3 years ago
- SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks (Scientific Reports)☆62Updated 4 years ago
- code for Gogleva et al manuscript☆45Updated last year
- The official code implementation for DREAMwalk in Python.☆16Updated last year
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆24Updated 3 years ago
- ☆16Updated 2 years ago
- ☆18Updated last year
- ☆16Updated 3 years ago
- Bi-Level Graph Neural Networks for Drug-Drug Interaction Prediction. ICML 2020 Graph Representation Learning and Beyond (GRL+) Workshop☆29Updated 4 years ago
- PyTorch implementation of "TGSA: Protein-Protein Association-Based Twin Graph Neural Networks for Drug Response Prediction with Similarit…☆22Updated 2 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆46Updated 3 years ago
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"☆20Updated 9 months ago
- Work on designing a graph co-attention algorithm.☆18Updated last year
- DPPIN: A Biological Repository of Dynamic Protein-Protein Interaction Network Data, IEEE BigData 2022☆27Updated last year
- Deep Generative Models for Drug Combination (Graph Set) Generation given Hierarchical Disease Network Embedding☆30Updated last year
- Drug-target interaction prediction using deepWalk node embedding algorithm on drugBank☆11Updated 4 years ago
- ☆19Updated 2 weeks ago
- REDDA: integrating multiple biological relations to heterogeneous graph neural network for drug-disease association prediction☆15Updated this week
- ☆9Updated 4 years ago
- [Bioinformatics 2021] This is the repo for the paper `SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summa…☆84Updated 3 months ago
- Codes and models for the paper "Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction".☆72Updated 2 years ago
- Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"☆39Updated last year
- ☆17Updated last year
- ☆14Updated 2 years ago