yejinjkim / drug-repurposing-graphLinks
Code repository for "Prioritizing Repurposable Drugs for SARS-CoV-2 using Deep Learning and Population-based Validation"
☆15Updated 3 months ago
Alternatives and similar repositories for drug-repurposing-graph
Users that are interested in drug-repurposing-graph are comparing it to the libraries listed below
Sorting:
- ☆57Updated 6 years ago
- SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks (Scientific Reports)☆64Updated 5 years ago
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆27Updated 4 years ago
- Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)☆72Updated last year
- GraphCDR: A graph neural network method with contrastive learning for cancer drug response prediction☆28Updated 3 years ago
- ☆34Updated 4 years ago
- ☆67Updated 2 years ago
- ☆19Updated 5 years ago
- The official code implementation for DREAMwalk in Python.☆22Updated 2 years ago
- ☆16Updated 3 years ago
- This repository provides an implementation of the DTiGEMSplus tool, a network-based method for computational Drug-Target Interaction pred…☆27Updated 3 years ago
- [Bioinformatics 2021] This is the repo for the paper `SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summa…☆86Updated last year
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…☆34Updated 3 weeks ago
- ☆57Updated 4 years ago
- ☆11Updated 5 years ago
- A Python package for drug discovery by analyzing causal paths on multiscale networks☆27Updated last year
- Network-based project to explore gene connectivity through biological scales☆23Updated 9 months ago
- Bi-Level Graph Neural Networks for Drug-Drug Interaction Prediction. ICML 2020 Graph Representation Learning and Beyond (GRL+) Workshop☆30Updated 4 years ago
- Materials for KDD2023 tutorial: Knowledge-augmented Graph Machine Learning for Drug Discovery: from Precision to Interpretability☆23Updated 2 years ago
- A graph-based deep learning framework for life science☆122Updated 2 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆50Updated 4 years ago
- Deep Generative Models for Drug Combination (Graph Set) Generation given Hierarchical Disease Network Embedding☆30Updated 2 years ago
- ☆36Updated last year
- Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification☆33Updated 4 years ago
- ☆218Updated 2 years ago
- ☆19Updated 2 years ago
- Heterogeneous disease-gene-related☆18Updated 4 years ago
- PyTorch implementation of "TGSA: Protein-Protein Association-Based Twin Graph Neural Networks for Drug Response Prediction with Similarit…☆24Updated 3 years ago
- Drug-target interaction prediction using deepWalk node embedding algorithm on drugBank☆11Updated 4 years ago
- Code for paper "A deep learning framework for drug repurposing via emulating clinical trials on real world patient data" (Accepted to Nat…☆98Updated 3 years ago