Alternatives and similar repositories for mlx-esm

Users that are interested in mlx-esm are comparing it to the libraries listed below

• TimothyStiles / how-to-synbio
  The resources I always recommend to new synthetic biologists.
  ☆82Updated 4 years ago
• whitead / minimalaf
  Minimal AlphaFold
  ☆55Updated last year
• michaelhla / pro-1
  reasoning model trained using GRPO towards rosetta REF2015 for protein stability
  ☆99Updated 2 months ago
• LiteFold / litefold
  Making folding experiments more accessible .
  ☆89Updated 4 months ago
• lightonai / RITA
  RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…
  ☆98Updated 2 years ago
• Frost-group / LeadCopperApatite
  Modelling the new Lead-Copper apatite proposed room temperature supeconductor
  ☆32Updated 2 years ago
• OpenBioML / bio-chem-lm
  ☆30Updated 2 years ago
• jgreener64 / pdb-benchmarks
  Benchmarking common tasks on proteins in various languages and packages
  ☆42Updated 4 years ago
• OpenBioML / project-proposal-template
  The project proposal template for OpenBioML community projects.
  ☆18Updated 2 years ago
• etowahadams / interprot
  [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.
  ☆121Updated 2 months ago
• Svensson-Lab / pro-hormone-predictor
  Peptide Predictor - this program will annotate all proteins predicted to generate proteolytic cleavage products
  ☆113Updated 4 months ago
• whitead / emoji-math
  A complete waste of time
  ☆15Updated 3 years ago
• hgbrian / biomodals
  bioinformatics tools running on modal
  ☆112Updated last month
• DrLeucine / how_to_create_a_protein
  A short course on proteins and protein design aimed at early career students
  ☆166Updated last year
• NVIDIA-Digital-Bio / la-proteina
  A partially latent flow matching model for the joint generation of a protein’s amino acid sequence and full atomistic structure, includin…
  ☆247Updated 2 months ago
• Koeng101 / dnadesign
  A lua package for designing DNA.
  ☆36Updated this week
• Future-House / BixBench
  Benchmark for LLM-based Agents in Computational Biology
  ☆65Updated 2 months ago
• lucidrains / neural-plexer-pytorch
  Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …
  ☆52Updated 2 years ago
• LiibanMo / scikit-jax
  Your favourite classical machine learning algos on the GPU/TPU
  ☆20Updated 11 months ago
• nboyd / joltz
  JAX translation of boltz
  ☆21Updated 4 months ago
• daenuprobst / molzip
  The gzip classification method implemented for molecule classification.
  ☆55Updated last month
• David-OConnor / daedalus
  Protein and molecule viewer, editor, simulator
  ☆125Updated this week
• yuhui-zh15 / CellFlux
  Official implementation of "CellFlux: Simulating Cellular Morphology Changes via Flow Matching" (ICML 2025)
  ☆18Updated 3 months ago
• gata-bio / affine-gaps
  Less-wrong single-file Numba-accelerated Python implementation of Gotoh affine gap penalty extensions for the Needleman–Wunsch, Smith-Wat…
  ☆10Updated last month
• wwpdb-dictionaries / mmcif_pdbx
  wwPDB PDBx/mmCIF Dictionary
  ☆10Updated 2 weeks ago
• googleinterns / protein-embedding-retrieval
  ☆34Updated 5 years ago
• yobibyte / ml-drug-discovery-tldrs
  TLDRs for ML in Drug Discovery papers
  ☆71Updated 2 years ago
• philipturner / molecular-renderer
  Renderer for molecular nanotechnology
  ☆85Updated last week
• adaptyvbio / egfr_competition_1
  This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.
  ☆34Updated last year
• jdagdelen / hodja
  A framework for building language model applications.
  ☆14Updated 2 years ago