CCPBioSim / mdanalysis-ml-workshopLinks
☆16Updated 3 years ago
Alternatives and similar repositories for mdanalysis-ml-workshop
Users that are interested in mdanalysis-ml-workshop are comparing it to the libraries listed below
Sorting:
- ☆13Updated 2 years ago
- User Guide for MDAnalysis☆29Updated last week
- fast functionalisation of molecules☆37Updated 4 years ago
- Package for consistent reporting of relative free energy results☆41Updated last week
- Absolute solvation free energy calculations with OpenFF and OpenMM☆26Updated last year
- OpenMM scripts for polarisable molecular dynamics with the AMOEBA force field☆27Updated 5 years ago
- ☆19Updated last month
- Exploratory work on free energy calculations with GROMACS using "separated topologies" approach (Rocklin et al., 2013).☆28Updated last year
- Gromacs Implementation of OPLS-AAM Force field☆15Updated 7 years ago
- Temperature generator for Replica Exchange MD simulations☆29Updated 3 years ago
- Interactive plotting of data annotated with molecule structures.☆12Updated 2 years ago
- Data and scripts for comprehensive benchmark of conformer relative energies☆25Updated 5 years ago
- Scripts, inputs and the results generated as part of the training the Sage line of OpenFF force fields.☆21Updated 7 months ago
- A command line application to launch molecular dynamics simulations with OpenMM☆40Updated 3 years ago
- A Package for Parametrization of Molecular Mechanics Force Fields☆32Updated 3 years ago
- A simple yet versatile toolkit to setup quantum mechanical/molecular mechanical (QM/MM) calculations from molecular dynamics trajectories…☆30Updated 2 years ago
- Workshop - Analysis of Molecular Dynamics Simulation Using Python☆19Updated 5 years ago
- Examples of applications of pymbar to various problems in simulation and experiment☆23Updated 11 years ago
- Standalone charge assignment from Espaloma framework.☆46Updated 3 months ago
- An automated framework for generating optimized partial charges for molecules☆39Updated last month
- Data generation and submission scripts for the QCArchive ecosystem.☆35Updated last week
- Package for reading, analysis and visualization of metadynamics HILLS☆38Updated 2 years ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆43Updated 2 months ago
- Repository for Chemical Perception Sampling Tools☆21Updated last year
- Partial Charge assignment for Molecular Dynamics☆23Updated last month
- Automated calculation of cavity in molecular cages☆23Updated 2 months ago
- scripts for analyzing molecular dynamics trajectories using VMD☆39Updated 10 years ago
- Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation te…☆19Updated 3 years ago
- Advanced toolkit for binding free energy calculations☆34Updated 5 months ago
- Conformer-Rotamer Ensemble Sampling Tool based on the xtb Semiempirical Extended Tight-Binding Program Package☆34Updated 2 months ago