BEER - Biophysical Evaluation Engine for Residues
☆13Nov 10, 2026Updated this week
Alternatives and similar repositories for BEER
Users that are interested in BEER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Constava analyzes conformational ensembles calculating conformational state propensities and conformational state variability.☆11Mar 16, 2026Updated 7 months ago
- An open source version of EVQLV's HyperBindAI, a contrastive learning model for Ab-Ag interactivity.☆12Jun 11, 2025Updated last year
- Score existing protein structures (PDB or CIF) with the Protenix confidence head, without running diffusion.☆17Jun 20, 2026Updated 4 months ago
- CryoACE☆13Jul 22, 2026Updated 3 months ago
- Auditable generation and multi-objective triage of structurally diverse, drug-like molecules with RDKit.☆11Aug 26, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆27May 16, 2026Updated 5 months ago
- Predicting water moelcule placements on protein surfaces using flow matching conditioned on learned protein structure embeddings.☆18Updated this week
- ☆11Dec 8, 2022Updated 3 years ago
- ☆10Aug 28, 2024Updated 2 years ago
- Protein-peptide docking with ESMFold language model☆16May 30, 2026Updated 5 months ago
- NAMD QM/MM Tutorial on Free Energy Profile of Reaction Mechanisms☆17Sep 14, 2018Updated 8 years ago
- ☆11Mar 27, 2026Updated 7 months ago
- A python implementation of pdb2oniom for QM/MM (ONIOM) calculations☆12Oct 2, 2025Updated last year
- galaxydock_dl for public☆11Dec 22, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DrugDomain database☆11Sep 16, 2025Updated last year
- ☆17Sep 26, 2025Updated last year
- AlphaJudge is a pipeline that evaluates AlphaFold-predicted protein complexes by combining AI-derived confidence metrics (ipTM, pDockQ, P…☆16Nov 2, 2026Updated last week
- ☆15Nov 18, 2025Updated 11 months ago
- ☆49Apr 30, 2024Updated 2 years ago
- Linux and MacOS codes to simulate protein transition pathways with eBDIMS2☆13Sep 26, 2026Updated last month
- A PyQt5-based interactive tool for aligning and visualizing molecular analogs with customizable highlighting, transformations, and high-r…☆12Apr 29, 2026Updated 6 months ago
- Peptide <-> SMILES utilities for monomer peptides with non-canonical residues, terminal modifications, and selected cyclizations.☆20Sep 11, 2026Updated 2 months ago
- ☆30Mar 20, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Protein structure search based on embeddings☆13Oct 25, 2026Updated 2 weeks ago
- Preprocessing file generator (v1) and hosted Boltz-2 API builder/submitter (v2.0): binary, ternary, or N-body protein-ligand-DNA-RNA bind…☆12Oct 22, 2026Updated 3 weeks ago
- ☆10Mar 6, 2023Updated 3 years ago
- Generative antibody language models for framework-conditioned CDR design, scoring, and preference-based alignment.☆15Oct 25, 2026Updated 2 weeks ago
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- ☆83Nov 3, 2026Updated last week
- DynamicGT: a dynamic-aware geometric transformer model to predict protein binding interfaces in flexible and disordered regions☆17Jun 18, 2026Updated 4 months ago
- ☆53Sep 24, 2025Updated last year
- FeNNol Pretrained Models Collection☆22Dec 17, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Alchemical Free Energy Calculations with Grand Canonical Ensemble☆24May 2, 2026Updated 6 months ago
- Cheminformatics package from the Miranda-Quintana group☆23Sep 23, 2026Updated last month
- ☆13Oct 5, 2026Updated last month
- ☆14Oct 27, 2024Updated 2 years ago
- The official pytorch implementation of "LightRoseTTA: High-efficient and Accurate Protein Structure Prediction Using an Ultra-Lightweight…☆17Apr 13, 2025Updated last year
- A fine-tuned version of ProteinMPNN for generating stable cyclic peptide sequences☆54Jun 30, 2026Updated 4 months ago
- ExplainBind: Explainable Physicochemical Determinants of Protein–Ligand Binding via Non-Covalent Interactions☆14Mar 6, 2026Updated 8 months ago
Are these results useful?