Slicer / SlicerNotebooksLinks
Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python
☆76Updated 2 years ago
Alternatives and similar repositories for SlicerNotebooks
Users that are interested in SlicerNotebooks are comparing it to the libraries listed below
Sorting:
- Recipes for common medical image segmentation tasks using 3D Slicer☆56Updated 2 years ago
- Website for NA-MIC Project Weeks☆89Updated this week
- This extension contains only a module with some tools to install PyTorch inside Slicer, using the best possible version.☆35Updated 2 weeks ago
- ☆86Updated last year
- This extension makes available Elastix medical image registration toolkit (http://elastix.isi.uu.nl/) available in Slicer.☆53Updated 5 months ago
- A project to provide custom sorting and renaming of dicom files☆78Updated last month
- Utilities for reading and writing files created by 3D Slicer☆39Updated 4 months ago
- Very fast greedy diffeomorphic registration code☆79Updated last month
- An image analysis workflow for open and reproducible research on femoral knee cartilage☆33Updated last year
- Processing Library and Analysis Toolkit for Medical Imaging in Python☆132Updated 2 weeks ago
- Python package for DICOM-SEG medical segmentation file reading and writing☆85Updated last year
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, …☆54Updated 3 months ago
- Implementation of the DeepVesselNet deep learning network☆150Updated last year
- A setup script to generate ITK Python Wheels☆64Updated this week
- NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.☆148Updated 3 years ago
- ☆110Updated 4 months ago
- Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.☆73Updated 11 months ago
- Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hiera…☆80Updated 8 months ago
- Slicer extensions index☆73Updated last week
- Multi-class U-Net for head CT segmentation☆34Updated 3 weeks ago
- TotalSegmentator packaged as an AIDE Application, based on the MONAI Application Package (MAP) standard.☆26Updated last year
- Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumes☆40Updated 2 weeks ago
- PyTorch implementation of HighRes3DNet☆54Updated last year
- A 3D Slicer extension for efficient segmentation with nnInteractive.☆79Updated 2 weeks ago
- ☆70Updated this week
- Transparent and reproducible medical image processing pipelines in Python.☆47Updated last week
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utili…☆157Updated last month
- DICOM RT-Struct to mask☆101Updated last year
- pymia: A Python package for data handling and evaluation in deep learning-based medical image analysis☆60Updated 7 months ago
- Repository for Vesselness algorithms☆47Updated last year