Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python
☆78Sep 20, 2022Updated 3 years ago
Alternatives and similar repositories for SlicerNotebooks
Users that are interested in SlicerNotebooks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Extension for 3D Slicer that allows the application to be used from Jupyter notebook☆265Apr 22, 2026Updated 2 months ago
- PyTorch implementation of HighRes3DNet☆55Jul 19, 2025Updated 11 months ago
- Python wrapper for Plastimatch.☆20Apr 1, 2025Updated last year
- docker config files for slicer☆24Jul 3, 2023Updated 2 years ago
- Slicer modules that support web services and web applications☆25May 22, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Slicer extension for TOMAAT☆17Jun 18, 2024Updated 2 years ago
- Website for NA-MIC Project Weeks☆93Updated this week
- UC Davis 2021 Senior Design Project: This Web-based liver segmentation app provides all the standard features of a medical image viewer a…☆12Jun 2, 2021Updated 5 years ago
- Convert numpy mask to dicom rtstruct☆13Feb 28, 2023Updated 3 years ago
- Toolkit for analysis of radiotherapy data☆13Jan 4, 2026Updated 5 months ago
- 3D Slicer module for TorchIO.☆25May 2, 2024Updated 2 years ago
- Deep learning software modules for image-guided medical procedures☆75Dec 14, 2025Updated 6 months ago
- Data driven 3D brain visualisation of semiology. Semiology to anatomy translator based on over 4600 patients from 309 peer-reviewed artic…☆12Sep 21, 2023Updated 2 years ago
- Stores the MHub models dockerfiles and scripts.☆11Apr 30, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PyTorch demo of "DEMI: Discriminative Estimator of Mutual Information"☆12Dec 1, 2020Updated 5 years ago
- A Medical Imaging Quality Assurance tool☆37Jul 10, 2024Updated last year
- Auto-segmentation Deep Learning Toolbox for radiotherapy☆14Jun 3, 2021Updated 5 years ago
- Collection of Orthanc Plugin scripts written in Python - adding miscellaneous functionality/utility☆17Jul 19, 2024Updated last year
- JavaScript FHIRcast sandbox☆22Aug 18, 2024Updated last year
- ☆11Sep 4, 2022Updated 3 years ago
- ☆82Sep 2, 2025Updated 10 months ago
- Prostate gland segmentation with deep Convolutional Neural Networks☆10May 29, 2017Updated 9 years ago
- Vascular Tree Synthesis Software. You will need CMake and ITK to run VascuSynth. Read the paper in the Insight Journal for instructions…☆12Jan 24, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code and Word2Vec embeddings of LOINC codes for KDD 2019 DSHealth paper "Evaluation of Embeddings of Laboratory Test Codes for Patients a…☆11Jun 13, 2024Updated 2 years ago
- Self-guided notebook tutorials to help get started with IDC☆48Updated this week
- Deep Learning Part 2, 2019 edition - transcriptions, screenshots and notebooks☆11Jul 19, 2019Updated 6 years ago
- Many additional segmentation tools for 3D Slicer's Segment Editor☆53Jun 24, 2026Updated last week
- 3D Slicer module to visualize the EPISURG dataset and segment postoperative brain resection cavities using deep learning.☆12Feb 4, 2021Updated 5 years ago
- DICOM file converter in Python☆17Sep 3, 2025Updated 9 months ago
- Data, notebooks, and articles associated with the RSNA AI Deep Learning Lab at RSNA 2021☆81Apr 20, 2022Updated 4 years ago
- Slicer3D extension for rating using Likert-type score Deep-learning generated segmentations, with segment editor functionality. Created t…☆26May 20, 2026Updated last month
- A Java SDK for TCIA☆11Jun 21, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Repo of m-files allowing automatic seamless insertion of lesions from one image into another for medical images.☆12Mar 31, 2015Updated 11 years ago
- Open source of Pyradiomics extension☆22Jul 7, 2022Updated 3 years ago
- Simple pure-python module for reading and writing nrrd files.☆123Jan 23, 2025Updated last year
- InnerEye dataset creation tool for InnerEye-DeepLearning library. Transforms DICOM data into mask for training Deep Learning models.☆21Mar 21, 2024Updated 2 years ago
- ☆45Jun 13, 2024Updated 2 years ago
- ☆28Jun 4, 2024Updated 2 years ago
- A collection of scripts which are used in our clinic to improve workflow with the radiotherapy treatment planning system RayStation.☆62Updated this week