okadalabipr / intro_to_param_estim
Parameter estimation of ODE models describing biological processes
☆10Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for intro_to_param_estim
- ☆11Updated 2 weeks ago
- Python module to analyse CRISPR-based libraries☆10Updated 3 years ago
- FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data☆29Updated 2 years ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆14Updated last year
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆94Updated last year
- LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.☆69Updated 5 months ago
- A collection of 50+ trajectory inference methods within a common interface 📥📤☆120Updated 11 months ago
- The Open Lab Book: A collection of freely distributable scientific protocols☆28Updated 4 years ago
- 😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎☆131Updated 3 weeks ago
- Python framework for Systems Biology modeling☆169Updated last month
- Unified knowledge-driven network inference from omics data☆25Updated 2 weeks ago
- A data-centric flow/mass cytometry automated analysis framework☆38Updated 2 years ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆200Updated 4 months ago
- Rule-based modeling framework☆60Updated last month
- Dose response curves and DIP rates for cell proliferation data in Python☆14Updated 2 months ago
- Subpopulation detection in high-dimensional single-cell data☆65Updated 4 years ago
- CZ CELLxGENE Discover Census☆87Updated this week
- Reconstruction algorithms for Python☆23Updated 3 weeks ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆60Updated 3 months ago
- Netflux is a user-friendly software for developing dynamic computational models of biological networks. Models are created in Excel forma…☆22Updated 4 months ago
- An interactive tool for segmenting yeast cells using deep learning.☆27Updated 8 months ago
- Methods for Image-Based Cell Profiling☆49Updated 6 months ago
- Multi-modal single cell analysis pipelines☆55Updated last week
- ☆73Updated 3 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆21Updated 3 weeks ago
- Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data proces…☆151Updated this week
- Python interface to TECAN Fluent liquid handling robot☆18Updated 7 months ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆54Updated last year
- All the action is on the course webpage -->☆27Updated last week
- A package for downloading and uploading figshare data☆24Updated last year