okadalabipr / intro_to_param_estim
Parameter estimation of ODE models describing biological processes
☆10Updated 4 years ago
Alternatives and similar repositories for intro_to_param_estim:
Users that are interested in intro_to_param_estim are comparing it to the libraries listed below
- A Python Framework for Modeling and Analysis of Signaling Systems☆28Updated last week
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated last year
- Python module to analyse CRISPR-based libraries☆11Updated 3 years ago
- Netflux is a user-friendly software for developing dynamic computational models of biological networks. Models are created in Excel forma…☆24Updated last month
- Python utilities for SBML☆40Updated last month
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated last year
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆104Updated this week
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- Python Environment for Modeling and Simulating Biological Systems☆112Updated last week
- A pure Python implementation of the SBOL standard.☆21Updated 2 weeks ago
- SWIG-Python wrappers implementing SBOL 2.2☆25Updated 3 years ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last year
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated this week
- ☆12Updated this week
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated last month
- Python framework for Systems Biology modeling☆177Updated 4 months ago
- Spatial Transcriptomics Dashboard☆28Updated last year
- 🎺 Plot DNA digestion band patterns with Python☆19Updated 2 years ago
- ☆22Updated 2 years ago
- Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I☆99Updated 2 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- The Open Lab Book: A collection of freely distributable scientific protocols☆28Updated 4 years ago
- Python library for calling Cytoscape Automation via CyREST☆76Updated this week
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆40Updated this week
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 6 months ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆22Updated 4 months ago
- Repository of tutorials for The COBRA Toolbox☆20Updated 3 months ago
- Light-weight Jupyter notebook tracker.☆33Updated 3 months ago
- A route planner for DNA assembly☆31Updated last year