nipy / nilabels
Tools to automate simple manipulations and measurements of medical images and segmentations in nifti format.
☆21Updated 9 months ago
Alternatives and similar repositories for nilabels:
Users that are interested in nilabels are comparing it to the libraries listed below
- A project to provide custom sorting and renaming of dicom files☆77Updated 8 months ago
- PCA Model for Brain Extraction☆17Updated 6 years ago
- DICOM to Nifti conversion with meta data preservation☆74Updated 3 months ago
- 3D MRI data exploration and segmentation tool.☆74Updated last year
- DCE MRI analysis in Julia☆38Updated 3 years ago
- Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)☆20Updated 4 years ago
- This is a tool to quickly preview nifti images on the terminal☆59Updated last month
- CONSNet: Convolutional Neural Networks for Skull-stripping in Brain MR Imaging using Consensus-based Silver Standard Masks☆17Updated 5 years ago
- A single NIfTI image saved with all 48 spatial rotation permutations☆29Updated 3 years ago
- Very fast greedy diffeomorphic registration code☆71Updated this week
- ☆27Updated 3 years ago
- Recipes for common medical image segmentation tasks using 3D Slicer☆55Updated 2 years ago
- Guide to tutorial materials for ANTs/R☆46Updated 6 years ago
- Automated deep-learning based brain extraction applicable to a broad range of MRI sequence types and with robust performance even in the …☆34Updated 3 years ago
- Metaproject uniting all the available minc tools☆38Updated last year
- Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI☆36Updated 5 months ago
- This extension makes available Elastix medical image registration toolkit (http://elastix.isi.uu.nl/) available in Slicer.☆52Updated 2 months ago
- Implementation of the White Matter Query Language and associated tools for dMRI white matter tract extraction and analysis☆28Updated last month
- Repository of hand corrected skullstripping for the Enhanced Rockland Sample Neurofeedback Study☆19Updated 4 years ago
- SIVIC is an open-source, standards-based software framework and application suite for processing and visualizing DICOM MR Spectroscopy da…☆32Updated last week
- Multiple Automatically Generated Templates brain segmentation algorithm☆48Updated 9 months ago
- Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space☆49Updated 2 years ago
- RadQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) and computed tomography (C…☆98Updated last week
- dMRI based fiber tracking using parallel transport tractography☆25Updated 3 weeks ago
- Version 2 of the minc-toolkit, uses tools based on ITK version 4.x☆53Updated 3 months ago
- Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)☆45Updated 3 years ago
- defacing utility for MRI images☆118Updated last year
- Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.☆78Updated last month
- Using ANTs to process multiple MR image types for a single subject☆24Updated 7 years ago
- Medical image format converter: from raw Bruker ParaVision to nifti.☆31Updated last year