nipy / nilabelsLinks
Tools to automate simple manipulations and measurements of medical images and segmentations in nifti format.
☆21Updated 3 months ago
Alternatives and similar repositories for nilabels
Users that are interested in nilabels are comparing it to the libraries listed below
Sorting:
- DICOM to Nifti conversion with meta data preservation☆77Updated 8 months ago
- A project to provide custom sorting and renaming of dicom files☆78Updated 3 months ago
- A single NIfTI image saved with all 48 spatial rotation permutations☆29Updated 4 years ago
- Very fast greedy diffeomorphic registration code☆81Updated 3 months ago
- A framework for developing neural network models for 3D image processing.☆165Updated 2 weeks ago
- Multiple Automatically Generated Templates brain segmentation algorithm☆50Updated last year
- Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.☆83Updated 6 months ago
- Version 2 of the minc-toolkit, uses tools based on ITK version 4.x☆53Updated 3 months ago
- Curated list of open-access databases with human structural MRI data☆129Updated 6 years ago
- Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space☆50Updated 3 years ago
- 3D MRI data exploration and segmentation tool.☆75Updated 2 years ago
- PCA Model for Brain Extraction☆17Updated 6 years ago
- A suite of tools for medical image processing focused on brain analysis☆124Updated last month
- DCE MRI analysis in Julia☆39Updated 3 years ago
- The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox☆74Updated 2 weeks ago
- Medical image format converter: from raw Bruker ParaVision to nifti.☆31Updated last year
- Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)☆20Updated 4 years ago
- A deep learning python package for neuroimaging data. Made by:☆128Updated 5 years ago
- Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI☆38Updated 10 months ago
- Automated anatomical brain label/shape analysis software (+ website)☆151Updated 4 years ago
- This is a tool to quickly preview nifti images on the terminal☆64Updated 6 months ago
- RadQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) and computed tomography (C…☆105Updated 3 weeks ago
- Automated deep-learning based brain extraction applicable to a broad range of MRI sequence types and with robust performance even in the …☆37Updated 4 years ago
- Recipes for common medical image segmentation tasks using 3D Slicer☆58Updated 3 years ago
- Python utilities for medical image and surface-based analysis☆32Updated last month
- This extension makes available Elastix medical image registration toolkit (http://elastix.isi.uu.nl/) available in Slicer.☆55Updated 2 weeks ago
- Please visit our new location: https://github.com/tractometry/pyAFQ☆59Updated 10 months ago
- Metaproject uniting all the available minc tools☆39Updated 2 years ago
- Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940☆16Updated 7 years ago
- Using ANTs to process multiple MR image types for a single subject☆25Updated 7 years ago