ncbi / gaptools

Related projects ⓘ

Alternatives and complementary repositories for gaptools

• ncbi / graf
  Genetic Relationship And Fingerprinting
  ☆13Updated last year
• EBISPOT / goci
  GWAS Catalog Ontology and Curation Infrastructure
  ☆26Updated last month
• DataBiosphere / terra-docker
  ☆27Updated 3 weeks ago
• ncbi / pm4ngs
  Project Manager for NGS data analysis
  ☆27Updated 2 years ago
• snakemake / snakeface
  The snakemake interface, currently works like a notebook (under development)
  ☆18Updated 2 years ago
• KnowEnG / TeachEnG
  A Teaching Engine for Genomics
  ☆11Updated 3 years ago
• NIH-HPC / snakemake-class
  Class materials for the NIH HPC snakemake class
  ☆16Updated last month
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆21Updated 2 weeks ago
• NCBI-Hackathons / RNA-Seq-in-the-Cloud
  An Easy to Use Analysis System for All Human Public bulk RNAseq Data!
  ☆18Updated last year
• TrinityCTAT / ctat-genome-lib-builder
  Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components
  ☆10Updated last year
• Illumina / happyR
  R tools to interact with hap.py output
  ☆15Updated 5 years ago
• BorgwardtLab / networkGWAS
  Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype …
  ☆14Updated last year
• Ensembl / ensembl-io
  File parsing and writing code for Ensembl
  ☆10Updated last week
• greenelab / generic-expression-patterns
  Distinguishing between generic and experiment-specific gene expression signals.
  ☆12Updated last year
• ncbi / cwl-ngs-workflows-cbb
  A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
  ☆22Updated last year
• Ensembl / ensembl-analysis
  Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
  ☆16Updated last week
• wassermanlab / JASPAR-UCSC-tracks
  Code and data used to create the JASPAR UCSC Genome Browser tracks data hub
  ☆13Updated 2 years ago
• snakemake / snakemake-workflow-catalog
  A statically generated catalog of available Snakemake workflows
  ☆32Updated last month
• DCGenomics / DangerTrack
  ☆13Updated 7 years ago
• davidliwei / mageck
  Experimental source code for MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout)
  ☆17Updated 9 years ago
• ncbi / magicblast
  ☆35Updated last year
• galaxyproject / awesome-galaxy
  Awesome resources related to Galaxy project
  ☆11Updated 2 years ago
• KnowEnG / SequencEnG
  An interactive learning resource for next-generation sequencing (NGS) techniques
  ☆27Updated 6 years ago
• dbcls / AOE
  AOE (All Of gene Expression): Index and meta-analysis of gene expression data that works
  ☆11Updated 2 years ago
• BaderLab / EnrichmentMapApp
  The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
  ☆32Updated last month
• ncbi / sars2variantcalling
  The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…
  ☆12Updated last year
• davidliwei / rnaseqmut
  RNA-Seq Mutation Detection
  ☆28Updated 3 years ago
• seqeralabs / tower-cli
  Nextflow Tower CLI tool
  ☆43Updated last week
• ConesaLab / SQANTI
  ☆10Updated last year
• Ensembl / ensembl-variation
  The Ensembl Variation Perl API and SQL schema
  ☆27Updated this week