Alternatives and similar repositories for gaptools

Users that are interested in gaptools are comparing it to the libraries listed below

• ncbi / pm4ngs
  Project Manager for NGS data analysis
  ☆30Updated last week
• ncbi / JUDI
  This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…
  ☆33Updated 3 years ago
• COMBINE-lab / wasabi
  Prepare Sailfish and Salmon output for downstream analysis
  ☆42Updated 6 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆84Updated 4 years ago
• ncbi / magicblast
  ☆36Updated 7 months ago
• tommyau / bamclipper
  Remove primer sequence from BAM alignments by soft-clipping
  ☆31Updated 6 years ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 4 years ago
• molgenis / NGS_DNA
  NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
  ☆18Updated 3 months ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆22Updated 3 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆85Updated 7 years ago
• hellosunking / Ktrim
  Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
  ☆31Updated 2 months ago
• gzhmat / ShinyCNV
  a Shiny/R application to view and annotate copy number variations
  ☆28Updated 2 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• nellore / rail
  Scalable RNA-seq analysis
  ☆73Updated 4 years ago
• HurlesGroupSanger / DeNovoWEST
  ☆23Updated last week
• ncbi / graf
  Genetic Relationship And Fingerprinting
  ☆14Updated 2 years ago
• COMBINE-lab / SalmonTools
  Useful tools for working with Salmon output
  ☆39Updated 5 years ago
• bcbio / bcbio_validation_workflows
  A community menagarie of automated variant validations using bcbio and the Common Workflow Language
  ☆21Updated 4 years ago
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated last year
• pmelsted / pizzly
  Fast fusion detection using kallisto
  ☆79Updated 6 months ago
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated 2 years ago
• broadinstitute / fiss
  FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine
  ☆31Updated 8 months ago
• salmonteam / SalmonBlogResponse
  Response to blog post about Salmon
  ☆37Updated 8 years ago
• quinlan-lab / vcf2db
  create a gemini-compatible database from a VCF
  ☆55Updated 4 years ago
• pachterlab / kma
  Keep Me Around: Intron Retention Detection
  ☆29Updated 6 years ago
• umccr / vcf_stuff
  📊Evaluating, filtering, comparing, and visualising VCF
  ☆28Updated 2 years ago
• IrinaVKuznetsova / CirGO
  ☆21Updated last year
• vseplyarskiy / Roulette
  A mutation rate model at the basepair resolution identifies the mutagenic effect of Polymerase III transcription
  ☆11Updated last year
• s-andrews / BamQC
  Mapped QC analysis program
  ☆44Updated 7 years ago
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆67Updated 3 years ago