mcapuccini / spark-tutorial
Introduction to predictive modeling in Spark with applications in pharmaceutical bioinformatics
☆39Updated 8 years ago
Alternatives and similar repositories for spark-tutorial:
Users that are interested in spark-tutorial are comparing it to the libraries listed below
- Population Stratification Analysis on Genomics Data Using Deep Learning☆26Updated 8 years ago
- An example of bioinformatics and bigdata tools can playing nicely together☆14Updated 8 years ago
- Ready-to-go Parquet-formatted public 'omics datasets☆30Updated 9 years ago
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 5 years ago
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Updated 7 years ago
- Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly☆84Updated 7 years ago
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Updated 7 years ago
- Apache Spark jobs such as Principal Coordinate Analysis.☆74Updated 7 years ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Updated 6 years ago
- Parallel Genomic Analysis Toolkit☆14Updated 5 years ago
- Advanced BigQuery examples on genomic data.☆89Updated 7 years ago
- Vagrant projects for various use-cases with Spark, Zeppelin, IPython / Jupyter, SparkR☆34Updated 8 years ago
- Apache Toree quickstart tutorial☆29Updated 8 years ago
- R on Apache Spark (SparkR) tutorials for Big Data analysis and Machine Learning as IPython / Jupyter notebooks☆120Updated 7 years ago
- Example Cloud Datalab iPython Notebooks for genomics use cases.☆25Updated 7 years ago
- self organizing map and variations implemented in Spark☆9Updated 8 years ago
- Apache Zeppelin on Kubernetes.☆28Updated 5 years ago
- tutorials and samples that show you how get the most out of IBM Analytics for Apache Spark☆79Updated 6 years ago
- An R-like GLM package for Apache Spark☆10Updated 9 years ago
- Spark MOOC setup and labs for DBC users☆45Updated 9 years ago
- Code, examples, reading list for JHU Frontiers of Sequencing Data Analysis class☆24Updated 10 years ago
- Mirror of Apache Zeppelin (Incubating)☆45Updated 8 years ago
- Public Presentations☆24Updated 5 years ago
- Spark example of collecting tweets and loading into HDFS/S3☆43Updated 11 years ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆70Updated 2 years ago
- ☆24Updated 9 years ago
- Conformal Prediction in Scala☆16Updated 4 years ago
- [Under development] Random classification and regression trees☆16Updated 9 years ago
- Quality control methods for human genomic variants.☆62Updated 2 years ago