Alternatives and similar repositories for ProAffinity-GNN

Users that are interested in ProAffinity-GNN are comparing it to the libraries listed below

• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆159Updated 2 weeks ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆135Updated 3 years ago
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆72Updated 2 weeks ago
• pengxingang / PocketXMol
  Implementation of PocketXMol, the pocket-interacting molecular generative foundation model.
  ☆99Updated 2 weeks ago
• ikalvet / heme_binder_diffusion
  ☆143Updated 5 months ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆213Updated 4 months ago
• baker-laboratory / PLACER
  PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
  ☆216Updated last month
• luwei0917 / DynamicBind
  repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model
  ☆275Updated last year
• schrojunzhang / KarmaDock
  ☆129Updated last year
• HBioquant / DiffBindFR
  Diffusion model based protein-ligand flexible docking method
  ☆115Updated last year
• lifanchen-simm / transformerCPI2.0
  Sequence-to-drug concept adds a perspective on drug design. It can serve as an alternative method to SBDD, particularly for proteins that…
  ☆77Updated 2 years ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆167Updated 2 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 3 years ago
• wengong-jin / DSMBind
  ☆96Updated last year
• ai4protein / Pro-Prime
  ☆75Updated 3 months ago
• yehlincho / BoltzDesign1
  ☆228Updated 4 months ago
• guyujun / pyrosetta-basic
  ☆177Updated 4 years ago
• Wang-Lin-boop / CADD-Scripts
  Scripts for virtual screening, cross docking and protein relax using Schrödinegr and Rosetta
  ☆84Updated 8 months ago
• jertubiana / ScanNet
  ☆136Updated 6 months ago
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆150Updated 2 years ago
• ELELAB / RosettaDDGPrediction
  ☆83Updated 3 weeks ago
• ai4protein / VenusFSFP
  VenusFSFP: Few-Shot Protein Fitness Prediction
  ☆102Updated last month
• CAODH / EquiScore
  ☆79Updated last year
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆94Updated 3 months ago
• PKUGaoGroup / DSDP
  Deep Site and Docking Pose (DSDP) is a blind docking strategy accelerated by GPUs, developed by Gao Group. For the site prediction part, …
  ☆63Updated 5 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆68Updated 5 months ago
• ComputArtCMCG / PLANET
  ☆70Updated 2 years ago
• guaguabujianle / EHIGN_PLA
  ☆21Updated last year
• zhanghaicang / carbonmatrix_public
  ☆119Updated 6 months ago
• bunzela / AIzymes
  ☆61Updated last month