lorenzo-rovigatti / oxDNA
A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings
☆53Updated 2 weeks ago
Alternatives and similar repositories for oxDNA
Users that are interested in oxDNA are comparing it to the libraries listed below
Sorting:
- oxView: Visualization and editing tool for DNA/RNA nanotechnology and oxDNA/oxRNA configuration analysis☆54Updated last week
- A collection of tools for DNA modelling☆20Updated last year
- Swarm-CG: Automatic Parametrization of Bonded Terms in MARTINI-based Coarse-Grained Models of Simple to Complex Molecules via Fuzzy Self-…☆45Updated 8 months ago
- ☆53Updated 2 weeks ago
- A python toolkit for analysing membrane protein-lipid interactions.☆63Updated 2 years ago
- ☆54Updated 2 years ago
- Interface to OpenMM for easy setup of molecular dynamic simulations of protein-ligand complexes☆128Updated last week
- A python module to plot secondary structure schemes☆25Updated last year
- Density based object completion over PBC.☆30Updated 5 months ago
- Automated Adaptive Absolute alchemical Free Energy calculator☆92Updated 3 weeks ago
- ☆64Updated last year
- Yasara plugins for Gromacs users☆27Updated last year
- Tool for generating MARTINI Polymer itps and structures☆15Updated 4 years ago
- Sire Molecular Simulations Framework☆54Updated this week
- ☆59Updated last week
- A comprehensive toolkit for predicting free energies☆53Updated 4 months ago
- ☆62Updated this week
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆23Updated this week
- Force Fields☆58Updated 3 months ago
- Fast calculation of hydrogen-bond strengths and free energy of hydration of small molecules.☆83Updated 3 months ago
- mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data☆33Updated last week
- Conversion of coarsegrain to atomistic (complete rewrite of the original CG2AT)☆31Updated 10 months ago
- Trusted force field files for gromacs☆47Updated 6 months ago
- ☆68Updated 10 months ago
- OpenMM plugin to interface with PLUMED☆66Updated 2 months ago
- An interoperable Python framework for biomolecular simulation.☆112Updated last month
- ☆31Updated 7 months ago
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆81Updated 3 weeks ago
- Modeling with limited data☆57Updated 6 months ago
- Describe and apply transformation on molecular structures and topologies☆112Updated this week