Alternatives and similar repositories for mantel

Users that are interested in mantel are comparing it to the libraries listed below

• puolival / multipy
  Multiple hypothesis testing in Python
  ☆109Updated last year
• brentp / combat.py
  python / numpy / pandas / patsy version of ComBat for removing batch effects.
  ☆105Updated 6 years ago
• CoBrALab / qbatch
  ☆32Updated 2 years ago
• CoAxLab / pycombat
  Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects
  ☆14Updated last year
• schlegelp / bioRxiv-LaTeX-template
  LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org
  ☆21Updated 9 years ago
• ACCLAB / DABEST-python
  Data Analysis with Bootstrapped ESTimation
  ☆359Updated 4 months ago
• jcbmarques / clusterdv
  Density valley clustering (cluserdv). Matlab implementation.
  ☆27Updated 7 years ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• hms-dbmi / brainmapr
  R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …
  ☆16Updated 10 years ago
• WarrenWeckesser / heatmapcluster
  A python library for generating a clustered heatmap with dendrograms.
  ☆34Updated 3 years ago
• berenslab / mini-atlas
  Phenotypic variation of transcriptomic cell types in mouse motor cortex
  ☆26Updated 3 years ago
• quantixed / manuscript-templates
  LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.
  ☆93Updated 2 weeks ago
• kylessmith / dynamicTreeCut
  Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.
  ☆40Updated 3 years ago
• markur4 / plotastic
  Streamlining statistical analysis by using plotting keywords in Python.
  ☆18Updated last year
• johnbarton / ACE
  Fast and flexible code for solving the inverse Ising/Potts inference problem
  ☆27Updated 2 years ago
• ManchesterBioinference / BranchedGP
  Branching Gaussian process
  ☆30Updated 2 years ago
• freeman-lab / pim
  friendly command-line tool for initializing python packages
  ☆18Updated 5 years ago
• menicgiulia / NetMedPy
  ☆16Updated last month
• martinagvilas / ML-Vis-BrainHack-2021
  Tutorials on introduction to Machine Learning and Visualization in Python
  ☆9Updated 4 years ago
• czbiohub-sf / simscity
  A library to simulate single-cell data
  ☆2Updated 2 years ago
• teekuningas / icasso
  Python implementation for investigating the reliability of ICA estimates by clustering and visualization
  ☆17Updated 3 years ago
• abidlabs / contrastive
  Contrastive PCA
  ☆218Updated 9 months ago
• berenslab / rna-seq-tsne
  The art of using t-SNE for single-cell transcriptomics
  ☆127Updated 8 months ago
• Jinke-Liu / Distance-of-distance-tSNE
  ☆10Updated last year
• portugueslab / flammkuchen
  Flexible HDF5 saving/loading library forked from deepdish (University of Chicago) and maintained by the Portugues lab
  ☆16Updated 8 months ago
• precimed / simu
  Fast and Efficient Tool to Simulate Summary Statistics from Genome-Wide Association Studies
  ☆12Updated last year
• alylab / labmanual
  Lab Manual for the Aly Lab at the University of California, Berkeley
  ☆94Updated 2 weeks ago
• statlab / permute
  permutation tests and confidence sets
  ☆58Updated last year
• sensein / mapalign
  Diffusion map based embedding and alignment
  ☆68Updated 3 years ago
• mfalkiewicz / pySTATIS
  Python implementation of STATIS for analysis of several data tables
  ☆12Updated 7 years ago