Alternatives and similar repositories for mantel

Users that are interested in mantel are comparing it to the libraries listed below

• brentp / combat.py
  python / numpy / pandas / patsy version of ComBat for removing batch effects.
  ☆104Updated 6 years ago
• WarrenWeckesser / heatmapcluster
  A python library for generating a clustered heatmap with dendrograms.
  ☆32Updated 3 years ago
• schlegelp / bioRxiv-LaTeX-template
  LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org
  ☆21Updated 9 years ago
• CoAxLab / pycombat
  Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects
  ☆13Updated last year
• mfalkiewicz / pySTATIS
  Python implementation of STATIS for analysis of several data tables
  ☆12Updated 7 years ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• CoBrALab / qbatch
  ☆32Updated 2 years ago
• aaronkollasch / jupyter-o2
  Run Jupyter on Orchestra 2
  ☆12Updated 2 years ago
• ManchesterBioinference / BranchedGP
  Branching Gaussian process
  ☆30Updated 2 years ago
• quantixed / manuscript-templates
  LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.
  ☆86Updated last year
• jcbmarques / clusterdv
  Density valley clustering (cluserdv). Matlab implementation.
  ☆26Updated 6 years ago
• markur4 / plotastic
  Streamlining statistical analysis by using plotting keywords in Python.
  ☆18Updated last year
• puolival / multipy
  Multiple hypothesis testing in Python
  ☆105Updated 9 months ago
• idekerlab / pyNBS
  Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
  ☆37Updated 7 months ago
• czbiohub-sf / simscity
  A library to simulate single-cell data
  ☆2Updated 2 years ago
• AtwalLab / BayesPowerlaw
  A package code for fitting power law distributions using Bayesian or Maximum Likelihood approaches.
  ☆12Updated 5 years ago
• pachterlab / CBP_2021
  ☆16Updated 3 years ago
• jdrudolph / goenrich
  GO enrichment with python -- pandas meets networkx
  ☆88Updated 4 years ago
• kylessmith / dynamicTreeCut
  Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.
  ☆40Updated 3 years ago
• johnbarton / ACE
  Fast and flexible code for solving the inverse Ising/Potts inference problem
  ☆26Updated 2 years ago
• bagrow / network-portrait-divergence
  An information-theoretic, all-scales approach to comparing networks
  ☆32Updated 2 years ago
• finkelsteinlab / BioRxiv-Template
  MS Word templates for a more readable BioRxiv product
  ☆23Updated 6 years ago
• maxconway / SNFtool
  Similarity Network Fusion
  ☆32Updated 9 years ago
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated 10 months ago
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆53Updated 8 months ago
• berenslab / rna-seq-tsne
  The art of using t-SNE for single-cell transcriptomics
  ☆125Updated 6 months ago
• omiq-ai / Multicore-opt-SNE
  Parallel opt-SNE implementation with Python wrapper
  ☆37Updated 2 years ago
• BenjaminDoran / unidip
  Python port of the Unidip clustering algorithm from: http://www.kdd.org/kdd2016/subtopic/view/skinny-dip-clustering-in-a-sea-of-noise
  ☆36Updated last year
• lujonathanh / BETS
  Bootstrap Elastic net regression from Time Series is a vector-autoregressive approach to causal inference from gene expression time serie…
  ☆20Updated 2 years ago
• IlyaLab / CombiningDependentPvaluesUsingEBM
  Python, R and Matlab implementation of Brown's Method to combine dependent P-values
  ☆25Updated 7 years ago