jwcarr / mantelLinks
Python implementation of the Mantel test, a significance test of the correlation between two distance matrices
☆33Updated 6 months ago
Alternatives and similar repositories for mantel
Users that are interested in mantel are comparing it to the libraries listed below
Sorting:
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆104Updated 6 years ago
- Density valley clustering (cluserdv). Matlab implementation.☆27Updated 7 years ago
- Diffusion map based embedding and alignment☆68Updated 3 years ago
- Streamlining statistical analysis by using plotting keywords in Python.☆18Updated last year
- Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects☆13Updated last year
- Multiple hypothesis testing in Python☆106Updated 10 months ago
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆40Updated 3 years ago
- A python library for generating a clustered heatmap with dendrograms.☆32Updated 3 years ago
- LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.☆89Updated last year
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 9 years ago
- ☆32Updated 2 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- Python, R and Matlab implementation of Brown's Method to combine dependent P-values☆25Updated 7 years ago
- Python implementation for investigating the reliability of ICA estimates by clustering and visualization☆17Updated 3 years ago
- The art of using t-SNE for single-cell transcriptomics☆125Updated 6 months ago
- LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org☆21Updated 9 years ago
- Python implementations for Sparse CCA☆18Updated 2 years ago
- customizable robust Independent Component Analysis (ICA)☆11Updated 9 months ago
- Python implementation of STATIS for analysis of several data tables☆12Updated 7 years ago
- Branching Gaussian process☆30Updated 2 years ago
- Fast and Efficient Tool to Simulate Summary Statistics from Genome-Wide Association Studies☆12Updated last year
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆37Updated 8 months ago
- A library to simulate single-cell data☆2Updated 2 years ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated last year
- TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 o…☆49Updated 5 years ago
- We have moved to https://github.com/limix/limix.☆24Updated 7 years ago
- ☆13Updated last week
- Creating multi-resolution embeddings and clusters from high dimensional data☆53Updated 8 months ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆7Updated 7 years ago
- Phenotypic variation of transcriptomic cell types in mouse motor cortex☆25Updated 3 years ago