Alternatives and similar repositories for mantel

Users that are interested in mantel are comparing it to the libraries listed below

• brentp / combat.py
  python / numpy / pandas / patsy version of ComBat for removing batch effects.
  ☆105Updated 6 years ago
• CoBrALab / qbatch
  ☆33Updated 2 weeks ago
• WarrenWeckesser / heatmapcluster
  A python library for generating a clustered heatmap with dendrograms.
  ☆34Updated 3 years ago
• puolival / multipy
  Multiple hypothesis testing in Python
  ☆110Updated last year
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• ACCLAB / DABEST-python
  Data Analysis with Bootstrapped ESTimation
  ☆359Updated this week
• jcbmarques / clusterdv
  Density valley clustering (cluserdv). Matlab implementation.
  ☆27Updated 7 years ago
• schlegelp / bioRxiv-LaTeX-template
  LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org
  ☆21Updated 9 years ago
• quantixed / manuscript-templates
  LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.
  ☆97Updated last month
• kylessmith / dynamicTreeCut
  Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.
  ☆40Updated 3 years ago
• markur4 / plotastic
  Streamlining statistical analysis by using plotting keywords in Python.
  ☆18Updated last year
• ManchesterBioinference / BranchedGP
  Branching Gaussian process
  ☆30Updated 2 years ago
• biokit / biokit
  Bioinformatics in Python
  ☆59Updated last year
• berenslab / rna-seq-tsne
  The art of using t-SNE for single-cell transcriptomics
  ☆127Updated 9 months ago
• mfalkiewicz / pySTATIS
  Python implementation of STATIS for analysis of several data tables
  ☆12Updated 8 years ago
• abidlabs / contrastive
  Contrastive PCA
  ☆220Updated 10 months ago
• CoAxLab / pycombat
  Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects
  ☆14Updated last year
• p-koo / deepomics
  deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis
  ☆22Updated 2 years ago
• sensein / mapalign
  Diffusion map based embedding and alignment
  ☆69Updated 3 years ago
• Jinke-Liu / Distance-of-distance-tSNE
  ☆10Updated last year
• johnbarton / ACE
  Fast and flexible code for solving the inverse Ising/Potts inference problem
  ☆27Updated 2 years ago
• ulfaslak / py_pcha
  Python package that implements the PCHA algorithm for Archetypal Analysis by Mørup et. al.
  ☆40Updated last week
• teekuningas / icasso
  Python implementation for investigating the reliability of ICA estimates by clustering and visualization
  ☆17Updated 3 years ago
• neurospin / pylearn-parsimony
  Structured Machine Learning in Python
  ☆46Updated 2 years ago
• bagrow / network-portrait-divergence
  An information-theoretic, all-scales approach to comparing networks
  ☆34Updated 3 years ago
• jdrudolph / goenrich
  GO enrichment with python -- pandas meets networkx
  ☆88Updated 5 years ago
• NikolayOskolkov / tSNE_vs_UMAP_GlobalStructure
  Here we address the global structure preservation by tSNE and UMAP
  ☆48Updated 5 years ago
• pachterlab / MCML
  ☆33Updated 4 years ago
• GPZ-Bioinfo / tmap
  topological data analysis of population-scale microbiomes
  ☆31Updated 2 years ago
• nfusi / qvalue
  Converts p-values in q-values, see (Storey and Tibshirani, 2003)
  ☆29Updated 8 years ago