Alternatives and similar repositories for filter-search

Users that are interested in filter-search are comparing it to the libraries listed below

• BioMedBigDataCenter / VENAS

  View on GitHub
  ☆16Aug 17, 2023Updated 2 years ago
• zouyinstein / hifisr

  View on GitHub
  HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high…
  ☆10Apr 15, 2025Updated 10 months ago
• liumz93 / PEM-Q

  View on GitHub
  a pipeline to process data of PEM-seq or data similar, which is more comprehensive than superQ
  ☆10Jan 7, 2026Updated last month
• arvestad / jprime

  View on GitHub
  Probabilistic Inference of Molecular Evolution
  ☆10Sep 6, 2021Updated 4 years ago
• IBEXCluster / HPC-GVCW

  View on GitHub
  Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.
  ☆13May 11, 2024Updated last year
• priviere / PPBstats

  View on GitHub
  A R package for Participatory Plant Breeding statisticial analyses
  ☆10Apr 30, 2021Updated 4 years ago
• Min-Zer0 / WinSNPGT

  View on GitHub
  ☆13Nov 13, 2023Updated 2 years ago
• 444thLiao / pangenome_workflow

  View on GitHub
  luigi based workflow for analysising WGS samples collecting from different source. It will auto clustering, annotating gene or species, a…
  ☆10Nov 28, 2023Updated 2 years ago
• XuepengSun / apple_diploid_genomes

  View on GitHub
  ☆10Jun 13, 2020Updated 5 years ago
• GordonLab / riesling-pipeline

  View on GitHub
  RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)
  ☆10Jun 28, 2018Updated 7 years ago
• mh11 / gnx-tools

  View on GitHub
  genome basic statistics tool (e.g. n50, n10, ng50,...)
  ☆15Mar 5, 2012Updated 13 years ago
• YutingPKU / AnalysisPipeline-NGS

  View on GitHub
  ☆12Dec 15, 2020Updated 5 years ago
• do-somethings-haha / multi-threaded_calculate_unsigned_TOM_from_unsigned_or_signed_Adjacency_Matrix_of_WGCNA

  View on GitHub
  Optimizing weighted gene co-expression network analysis (WGCNA, an R package) with a multi-threaded calculation of the Topological Overla…
  ☆12Jan 5, 2022Updated 4 years ago
• spodell / Darkhorse2

  View on GitHub
  DarkHorse2 source code
  ☆10May 3, 2022Updated 3 years ago
• jameslz / ncbi-kit

  View on GitHub
  Download NCBI assembly genomes with ftp. rsync, ascp
  ☆12Aug 2, 2022Updated 3 years ago
• yinlabniu / HGT-Finder

  View on GitHub
  Program for finding horizontal gene transfer using BLAST result
  ☆11May 26, 2023Updated 2 years ago
• champly / kubernetes-lib

  View on GitHub
  centos7(mini)通过kubeadm安装kubenetes集群
  ☆12Apr 2, 2019Updated 6 years ago
• AndolfoG / HRP

  View on GitHub
  The full-length Homology-based R-gene Prediction (HRP) pipeline to comprehensively identify full-length NB-LRR gene models within genome …
  ☆11Jul 27, 2023Updated 2 years ago
• macmanes-lab / PAML

  View on GitHub
  This is code for running Orthofinder -> PAML
  ☆12Jul 27, 2016Updated 9 years ago
• fgvieira / badirate

  View on GitHub
  Estimating gene family turnover rates by likelihood-based methods
  ☆12Aug 17, 2020Updated 5 years ago
• cfljam / SSR_marker_design

  View on GitHub
  Galaxy Wrappers and helpers for the MISA ttols
  ☆11Oct 11, 2014Updated 11 years ago
• cwieder / py-ssPA

  View on GitHub
  Single sample pathway analysis tools for omics data
  ☆13Nov 9, 2024Updated last year
• mathcbc / GMM-EM

  View on GitHub
  The EM Algorithm for Gaussian Mixtures （高斯混合模型的EM算法实现）
  ☆12Dec 30, 2018Updated 7 years ago
• spyros-lytras / dinuq

  View on GitHub
  The Dinucleotide Quantification Python Package
  ☆11Mar 12, 2022Updated 3 years ago
• pujinxiao / crops_pider

  View on GitHub
  中国作物种质信息网
  ☆10Apr 1, 2017Updated 8 years ago
• dgpinheiro / bioinfoutilities

  View on GitHub
  Bioinformatics scripts
  ☆14Dec 23, 2024Updated last year
• cemalley / scRNASeq-bulkRNASeq

  View on GitHub
  single cell and bulk RNASeq analysis scripts
  ☆14Jan 13, 2022Updated 4 years ago
• Odinidoer / Annotation_GO.KEGG.COG

  View on GitHub
  整合型的对于生物学注释的信息/GO和KEGG全谱注释和富集
  ☆14Nov 8, 2017Updated 8 years ago
• marcottelab / protein_complex_maps

  View on GitHub
  Kdrew's scripts for handling protein complex map data
  ☆14Jun 12, 2025Updated 8 months ago
• Minglc / CisTrans-ECAS

  View on GitHub
  ☆11Dec 15, 2025Updated 2 months ago
• 1001genomes / AraGWAS

  View on GitHub
  GWAS catalogue for Arabidopsis thaliana
  ☆11Feb 29, 2024Updated last year
• mkasa / klab

  View on GitHub
  Kasahara lab. public repository.
  ☆14Nov 28, 2025Updated 2 months ago
• umerijaz / TAXAassign

  View on GitHub
  Pipeline to annotate sequences at different taxonomic levels using NCBI's taxonomy
  ☆19Jul 19, 2013Updated 12 years ago
• painyeph / FishersExactTest

  View on GitHub
  A fast, precise, pure Python implementation of Fisher's exact test
  ☆12Mar 27, 2017Updated 8 years ago
• kwongj / roary2fripan

  View on GitHub
  Formats Roary output for viewing in FriPan
  ☆11May 23, 2018Updated 7 years ago
• NCBI-Hackathons / ATACFlow

  View on GitHub
  An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter
  ☆14Jan 18, 2019Updated 7 years ago
• liloganle / GMM-EM

  View on GitHub
  关于混合高斯模型的期望最大算法的实现
  ☆11Aug 24, 2018Updated 7 years ago
• Weikai-47 / Pepper_T2T

  View on GitHub
  Here, we report telomere-to-telomere (T2T) gap-free genomes for domesticated pepper Capsicum annuum and wild relative Capsicum rhomboideu…
  ☆13Feb 18, 2024Updated last year
• dhglab / Genome-wide-changes-in-lncRNA-alternative-splicing-and-cortical-patterning-in-autism

  View on GitHub
  Human Postmortem ASD RNA-seq Analysis Parikshak et al 2016
  ☆15Sep 28, 2021Updated 4 years ago