Describe and apply transformation on molecular structures and topologies
☆150Jul 28, 2026Updated last month
Alternatives and similar repositories for vermouth-martinize
Users that are interested in vermouth-martinize are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems☆94Apr 19, 2026Updated 4 months ago
- Martini 3 small molecule database☆73May 13, 2026Updated 3 months ago
- Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates☆197Aug 17, 2026Updated 2 weeks ago
- Mapping from Coarse Grain Models to Atomistic (and Back)☆22Sep 27, 2023Updated 2 years ago
- ☆65Dec 10, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Automated bonded parameters for Martini 3☆27Jul 20, 2025Updated last year
- Swarm-CG: Automatic Parametrization of Bonded Terms in MARTINI-based Coarse-Grained Models of Simple to Complex Molecules via Fuzzy Self-…☆49Aug 19, 2024Updated 2 years ago
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆69Aug 2, 2026Updated 3 weeks ago
- Create coarse grain Martini input files for Gromacs from (atomistic) pdb files.☆40Nov 2, 2022Updated 3 years ago
- Automatic MARTINI parametrization of small organic molecules☆76May 28, 2025Updated last year
- A voxel based approach for dynamic cluster analysis of molecular dynamics trajectories.☆34Nov 5, 2025Updated 9 months ago
- Build coarse-grained mapping for molecules from a web-GUI☆19Sep 10, 2021Updated 4 years ago
- MDAnalysis tool to calculate membrane curvature.☆36Updated this week
- A Python toolkit for the analyis of lipid membrane simulations☆36Jun 20, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Collection of interaction and molecule parameters for the Martini3 force-field☆23Feb 7, 2023Updated 3 years ago
- Main code repository for FATSLiM☆23Feb 13, 2022Updated 4 years ago
- Conversion of coarsegrain to atomistic (complete rewrite of the original CG2AT)☆38Jul 17, 2024Updated 2 years ago
- A tool for visualizing Martini force field simulations in VMD☆26May 11, 2026Updated 3 months ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆50May 22, 2026Updated 3 months ago
- ☆27Jan 20, 2022Updated 4 years ago
- A python toolkit for analysing membrane protein-lipid interactions.☆72Mar 30, 2026Updated 5 months ago
- Optimization tool for calibrating coarse-grained force fields of lipids, relying on the simultaneous usage of reference AA trajectories (…☆10Jun 6, 2023Updated 3 years ago
- Tools for coarse-grained molecular dynamics simulations using the SPICA force field☆13May 12, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The Open Forcefield Toolkit provides implementations of the SMIRNOFF format, parameterization engine, and other tools. Documentation avai…☆410Aug 18, 2026Updated last week
- A package for atom-typing as well as applying and disseminating forcefields☆147Updated this week
- Toolkit for free-energy calculation setup/analysis and biomolecular structure handling☆182Jul 28, 2026Updated last month
- Parameter/topology editor and molecular simulator☆453Jul 1, 2026Updated last month
- Perform polymerization and crosslinking in MARTINI coarse-grained forcefield using GROMACS MD package☆31Jan 21, 2026Updated 7 months ago
- Simulation-Enabled Estimation of Kinetic Rates - Version 2☆36Dec 10, 2025Updated 8 months ago
- OpenMM plugin to interface with PLUMED☆82Jan 15, 2026Updated 7 months ago
- Conversion tool for molecular simulations☆230Jan 22, 2026Updated 7 months ago
- Tools to build coarse grained models and perform simulations with OpenMM☆24Aug 12, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- CHARMM and AMBER forcefields for OpenMM (with small molecule support)☆379Aug 5, 2026Updated 3 weeks ago
- TS2CG version 2☆29Apr 18, 2026Updated 4 months ago
- Flexible storage of chemical topology for molecular simulation☆73Updated this week
- An open library for the analysis of molecular dynamics trajectories☆729Aug 19, 2026Updated last week
- Automatic Martini force field generator for small organic molecules (up to 25 heavy atoms), Martini 3 compatible☆40Jul 17, 2026Updated last month
- easyPARM is a computational tool developed to simplify the derivation of force field parameters for metal-containing molecular systems an…☆46May 21, 2026Updated 3 months ago
- Enhanced sampling methods for molecular dynamics simulations☆46Dec 16, 2022Updated 3 years ago