FabianPlum / OmniTraxView external linksLinks
Deep learning-driven multi animal tracking and pose estimation add-on for Blender
☆39Apr 23, 2025Updated 9 months ago
Alternatives and similar repositories for OmniTrax
Users that are interested in OmniTrax are comparing it to the libraries listed below
Sorting:
- replicAnt - generating annotated images of animals in complex environments with Unreal Engine☆67Feb 3, 2026Updated 2 weeks ago
- SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.☆27Oct 11, 2024Updated last year
- Anatomical space conventions made easy.☆12Updated this week
- FreiPose: A Deep Learning Framework for Precise Animal Motion Capture in 3D Spaces☆18Apr 11, 2022Updated 3 years ago
- UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images☆13Feb 10, 2026Updated last week
- Automatic Gait Analysis in Python☆26Updated this week
- Deep learning for animal action recognition toolbox☆35Sep 18, 2025Updated 4 months ago
- DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.☆13Updated this week
- An R toolbox for analysing movement across space and time☆10Jan 16, 2026Updated last month
- ☆10Mar 15, 2023Updated 2 years ago
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated 11 months ago
- Brain flatmaps generation☆11Oct 5, 2022Updated 3 years ago
- Loading and saving of image data.☆10Feb 9, 2024Updated 2 years ago
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- A repository for our participation in Google Summer of Code☆13Apr 15, 2025Updated 10 months ago
- Build unbiased anatomical templates from individual images☆12Updated this week
- Web based Image Viewer developed @ Center for Advanced Imaging [University of Queensland]☆19May 18, 2023Updated 2 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Oct 22, 2024Updated last year
- ☆11Oct 21, 2025Updated 3 months ago
- Image processing tool focusing on biological applications☆14Jul 18, 2025Updated 6 months ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Jan 5, 2024Updated 2 years ago
- Re-usable GitHub Action scripts☆14Feb 9, 2026Updated last week
- Behavior Classifier Component from the Jax Animal Behavior System☆20Updated this week
- Mix-and-match computer vision tools for your animal behaviour analysis☆25Feb 3, 2026Updated 2 weeks ago
- ☆14Jan 25, 2024Updated 2 years ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Feb 3, 2026Updated 2 weeks ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Nov 24, 2023Updated 2 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 2 months ago
- A Python package to download neuronal morphologies☆18Feb 3, 2026Updated 2 weeks ago
- Fast, volumetric cell detection. In development.☆22Feb 4, 2026Updated last week
- GPU-based 3D non-rigid volumetric registration☆43Aug 26, 2025Updated 5 months ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Feb 26, 2021Updated 4 years ago
- Deep Imputation for Skeleton data☆26Feb 5, 2026Updated last week
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆27Updated this week
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆20Dec 16, 2025Updated 2 months ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Mar 20, 2025Updated 10 months ago
- Standalone cellfinder cell detection algorithm☆20Jan 3, 2024Updated 2 years ago