ver228 / tierpsy-tracker
Multi-Worm Behaviour Tracker
☆24Updated 4 years ago
Alternatives and similar repositories for tierpsy-tracker:
Users that are interested in tierpsy-tracker are comparing it to the libraries listed below
- A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab u…☆48Updated 5 years ago
- Deprecated: Read and write image data from and to TIFF files.☆61Updated 6 years ago
- Multi-Worm Behaviour Tracker. README here:☆22Updated 2 years ago
- Provides a function to write a NumPy array to a GIF, or a list of arrays to an animated GIF.☆58Updated 6 years ago
- Legacy project superseded by https://github.com/morphonets/SNT☆11Updated 3 years ago
- perspective-correct VR for freely moving animals engine☆17Updated last year
- Python samples for Micro-Manager: image acquisition and microscope control system☆22Updated 5 years ago
- ☆90Updated last year
- python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.☆15Updated 8 years ago
- ☆40Updated 4 years ago
- Motion Tracking☆13Updated 2 years ago
- A Python implementation of fast non-negative deconvolution☆23Updated 5 years ago
- A library to facilitate machine learning on multi-dimensional images.☆81Updated last month
- TensorFlow Deconvolution for Microscopy Data☆90Updated 2 years ago
- This package provides Python libNeuroML, for working with neuronal models specified in NeuroML☆40Updated 2 weeks ago
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆27Updated 6 years ago
- Source code of the Scalable Brain Atlas website (scalablebrainatlas.incf.org)☆14Updated 8 years ago
- Python Image Sequence: Load video and sequential images in many formats with a simple, consistent interface.☆263Updated 7 months ago
- Documentations of BigNeuron Project progress☆24Updated 8 years ago
- Compilation of information and code bases related to open-source trackers for C. elegans☆12Updated last year
- Flood-Filling Networks for instance segmentation in 3d volumes.☆319Updated 3 weeks ago
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Updated 5 years ago
- Convert Matlab v7.3 '.mat' files (i.e. HDF5 file format) into Python's pickle or numpy format.☆35Updated 12 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Block-wise task scheduling for large nD volumes.☆29Updated 3 months ago
- Python package for analysis of dynamic fluorescence microscopy data☆101Updated 5 years ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆21Updated 6 years ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Updated 3 years ago
- Rhoana - Dense Automated Neuron Annotation pipeline☆28Updated 7 years ago
- website for the napari image viewer☆44Updated this week