C/C++ implementation of the Smith-Waterman algorithm by using SIMD operations (e.g SSE4.1)
☆23Nov 27, 2016Updated 9 years ago
Alternatives and similar repositories for diagonalsw
Users that are interested in diagonalsw are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)☆40Jan 12, 2024Updated 2 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- Benchmarking pairwise aligners☆37Feb 8, 2025Updated last year
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 9 years ago
- WoW64 -> x64☆18Oct 1, 2016Updated 9 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Jul 15, 2019Updated 6 years ago
- Source code for the article "A bug story: data alignment on x86"☆17Nov 6, 2016Updated 9 years ago
- genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorph…☆16Mar 3, 2022Updated 4 years ago
- Python-like decorator in Rust☆15May 14, 2020Updated 6 years ago
- This project has been moved from a private repository.☆11May 4, 2018Updated 8 years ago
- SetSketch: Filling the Gap between MinHash and HyperLogLog☆49Aug 11, 2021Updated 4 years ago
- Code accompanying the publication for compressed graph annotation☆13Feb 14, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Smith-Waterman database searches with inter-sequence SIMD parallelisation☆61Nov 7, 2023Updated 2 years ago
- Proof Of Concept for inserting code in ELF binaries.☆25Mar 14, 2014Updated 12 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Metric tree demo☆14Oct 3, 2014Updated 11 years ago
- Non-sequential structural alignment program for protein structure☆19Apr 10, 2026Updated 2 months ago
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Microbenchmarks for Aarch64 (Cortex A53)☆12Apr 19, 2023Updated 3 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- Functional Analysis of Metagenomes by Likelihood Inference☆17Sep 8, 2025Updated 9 months ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- Next-Generation Sequencing (NGS) Data Processing Tool & Library☆10May 9, 2023Updated 3 years ago
- kClust is a fast and sensitive clustering method for the clustering of protein sequences. It is able to cluster large protein databases d…☆18Feb 12, 2019Updated 7 years ago
- Math Kernel Library for VideoCore IV QPU☆11Oct 24, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated 2 years ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- plane sweep filtering genome alignments☆24May 23, 2026Updated last month
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆77Jun 17, 2024Updated 2 years ago
- ☆15Dec 8, 2022Updated 3 years ago
- ☆14Jan 20, 2016Updated 10 years ago
- Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences☆10Aug 1, 2016Updated 9 years ago