ibbis-bio / common-mechanismLinks
A free, open-source, globally available tool for DNA sequence screening
☆34Updated 3 weeks ago
Alternatives and similar repositories for common-mechanism
Users that are interested in common-mechanism are comparing it to the libraries listed below
Sorting:
- Parse GFF3 into Pandas dataframes☆30Updated last year
- A genome browser in your Jupyter notebook☆31Updated 7 months ago
- Python bindings for the TaxonKit library☆41Updated last month
- Taxon Information Query - fast, offline querying of NCBI Taxonomy and related data☆60Updated last year
- Find common blocks and differences between DNA sequences☆42Updated 2 months ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆63Updated last year
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Updated 2 years ago
- Software for predicting translation initiation rates in bacteria☆30Updated 5 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 7 months ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆61Updated last month
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆34Updated last year
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85Updated 3 years ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆23Updated last year
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆57Updated 3 weeks ago
- A versatile toolkit for k-mers with taxonomic information☆81Updated 4 months ago
- Nanopore UMI-linked consensus sequencing☆16Updated 4 years ago
- Sequence analysis library used by Eddy/Rivas lab code☆50Updated 4 months ago
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆37Updated this week
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 2 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆61Updated 9 months ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated 3 weeks ago
- 🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more☆46Updated 7 months ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- Protein Sequence Annotation with Language Models☆25Updated last week
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 9 months ago
- ☆10Updated 6 years ago
- ☆31Updated 4 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆82Updated last month