Alternatives and similar repositories for Higra

Users that are interested in Higra are comparing it to the libraries listed below

• DerThorsten / nifty
  A nifty library for graph based image segmentation.
  ☆45Updated 2 months ago
• higra / Higra-Notebooks
  Demonstration and tutorial notebooks for the Higra library
  ☆13Updated 2 years ago
• pmneila / PyMaxflow
  Python library for creating flow networks and computing the maxflow/mincut (aka graph-cuts for Python)
  ☆249Updated 7 months ago
• jni / skan
  Python module to analyse skeleton (thin object) images
  ☆128Updated last month
• hbldh / pyefd
  Python implementation of "Elliptic Fourier Features of a Closed Contour"
  ☆91Updated last year
• mattbv / pc2graph
  Python script that converts a 3D point cloud into a NetworkX graph.
  ☆24Updated 6 years ago
• VeraPancaldiLab / tysserand
  Fast reconstruction of spatial networks from bioimages.
  ☆25Updated 2 months ago
• jonbarron / hist_thresh
  ☆104Updated 4 years ago
• p3732 / gpumap
  GPU-Parallelized UMAP
  ☆51Updated 6 years ago
• freifeld / cpabDiffeo
  CPAB Transformations: finite-dimensional spaces of simple, fast, and highly-expressive diffeomorphisms derived from parametric, continuou…
  ☆25Updated 5 years ago
• constantinpape / z5
  Lightweight C++ and Python interface for datasets in zarr and N5 format
  ☆120Updated 2 months ago
• vmorariu / figtree
  Fast computation of Gauss transforms in multiple dimensions; enables efficient Kernel Density Estimation (KDE) with Gaussian kernels.
  ☆64Updated 6 years ago
• bellockk / alphashape
  Toolbox for constructing alpha shapes.
  ☆289Updated 9 months ago
• rusty1s / pytorch_spline_conv
  Implementation of the Spline-Based Convolution Operator of SplineCNN in PyTorch
  ☆180Updated last month
• TheJacksonLaboratory / zarrdataset
  A dataset for loading zarr files to be used in machine learning training pipelines
  ☆34Updated last month
• daniilidis-group / all-graphs-lead-to-rome
  Graph Convolutional Networks for multi-image matching
  ☆17Updated 6 years ago
• janelia-flyem / gala
  Automatic segmentation of electron microscopy volumes
  ☆77Updated 4 years ago
• bchidest / CFNet
  ☆26Updated 6 years ago
• Nicola17 / High-Dimensional-Inspector
  Scalable analysis of large high-dimensional data
  ☆66Updated 5 years ago
• svi-opensource / libics
  Image Cytometry Standard file reading and writing.
  ☆18Updated 10 months ago
• MIDA-group / globalign
  Fast global mutual information-based rigid alignment in the Fourier domain
  ☆32Updated 11 months ago
• 05dirnbe / nefi
  Network Extraction From Images
  ☆38Updated 4 years ago
• koulakis / h-nne
  A fast hierarchical dimensionality reduction algorithm.
  ☆66Updated last month
• martinsch / pgmlink
  pgmLink - A Tracking-by-Assignment Software
  ☆16Updated 8 years ago
• mavillan / py-hausdorff
  Fast computation of Hausdorff distance in Python
  ☆256Updated 4 years ago
• CellProfiler / centrosome
  An open source image processing library
  ☆19Updated 3 months ago
• kasparmartens / NeuralDecomposition
  PyTorch implementation of the paper "Neural Decomposition: Functional ANOVA with Variational Autoencoders"
  ☆25Updated 5 years ago
• artusoma / prinPy
  Simple Principal Curves in Python
  ☆33Updated 4 years ago
• seung-lab / fill_voids
  Fill holes in binary 2D & 3D images fast.
  ☆25Updated last month
• abailoni / GASP
  Generalized algorithm for agglomerative clustering of signed graphs
  ☆13Updated 3 years ago