Alternatives and similar repositories for nefi

Users that are interested in nefi are comparing it to the libraries listed below

• fiji / VIB
  ☆14Updated 9 months ago
• maweigert / spimagine
  GPU accelerated volume rendering / processing in Python
  ☆119Updated 6 years ago
• DamCB / tyssue
  An epithelium simulation library
  ☆62Updated 5 months ago
• jni / skan
  Python module to analyse skeleton (thin object) images
  ☆128Updated last month
• berenslab / MorphoPy
  ☆42Updated last month
• ilastik / ilastik
  ilastik-shell, applets, and workflows to string them together.
  ☆377Updated last week
• maweigert / gputools
  GPU accelerated image/volume processing in Python
  ☆111Updated 2 months ago
• navis-org / pymaid
  Python library to interface with CATMAID servers. Fully interoperable with navis.
  ☆24Updated 3 months ago
• imjoy-team / ImJoy
  ImJoy: Deep Learning Made Easy!
  ☆189Updated last year
• higra / Higra
  Hierarchical Graph Analysis
  ☆103Updated 6 months ago
• CellCognition / cecog
  A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.
  ☆44Updated last year
• fiji / Trainable_Segmentation
  Fiji library to perform image segmentation based on the Weka learning schemes
  ☆117Updated 9 months ago
• hammerlab / flowdec
  TensorFlow Deconvolution for Microscopy Data
  ☆90Updated 3 years ago
• DerThorsten / nifty
  A nifty library for graph based image segmentation.
  ☆45Updated 2 months ago
• hbldh / pyefd
  Python implementation of "Elliptic Fourier Features of a Closed Contour"
  ☆91Updated last year
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆83Updated last week
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆24Updated last week
• abria / TeraStitcher
  A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
  ☆85Updated last year
• CAVEconnectome / MeshParty
  ☆36Updated last week
• germannp / yalla
  Spheroid models of morphogenesis for the GPU.
  ☆41Updated last year
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆154Updated this week
• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆24Updated last week
• catmaid / CATMAID
  Collaborative Annotation Toolkit for Massive Amounts of Image Data
  ☆195Updated last week
• NeuroMorph-EPFL / NeuroMorph
  The NeuroMorph analysis and visualization toolkit
  ☆67Updated 9 months ago
• saalfeldlab / render
  Render transformed image tiles
  ☆34Updated this week
• adwanner / PyKNOSSOS
  PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation…
  ☆18Updated 5 years ago
• traja-team / traja
  Python tools for spatial trajectory and time-series data analysis
  ☆113Updated 10 months ago
• AllenCellModeling / torch_integrated_cell
  ☆46Updated 6 years ago
• piximi / piximi_old
  a free, open-source web app for annotating, training, and evaluating image understanding algorithms
  ☆25Updated 3 years ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆31Updated 3 months ago