Alternatives and similar repositories for testdata

Users that are interested in testdata are comparing it to the libraries listed below

• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆116Updated 5 years ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆83Updated this week
• zstephens / neat-genreads
  NEAT read simulation tools
  ☆101Updated 3 years ago
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆152Updated last year
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated 2 months ago
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆102Updated this week
• galaxyproject / dunovo
  Reference-free duplex sequencing pipeline.
  ☆19Updated 3 years ago
• nf-core / hlatyping
  Precision HLA typing from next-generation sequencing data
  ☆78Updated this week
• lpryszcz / bin
  My bioinfo toolbox
  ☆50Updated last year
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆41Updated 5 years ago
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆47Updated 2 months ago
• openvar / variantValidator
  Public repository for VariantValidator project
  ☆79Updated 3 weeks ago
• imgag / megSAP
  a Medical Genetics Sequence Analysis Pipeline
  ☆86Updated last week
• gatk-workflows / seq-format-conversion
  Workflows for converting between sequence data formats
  ☆40Updated 4 years ago
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆143Updated 5 months ago
• alastair-droop / fqtools
  An efficient FASTQ manipulation suite
  ☆138Updated 6 years ago
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆82Updated 11 months ago
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆138Updated 3 years ago
• CCDG / Pipeline-Standardization
  ☆81Updated 7 years ago
• geocarvalho / sv-cnv-studies
  Relevant papers for CNV and SV approaches
  ☆94Updated last year
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆107Updated last week
• CRISPRlab / CRISPRdisco
  CRISPR discovery pipeline
  ☆33Updated 7 years ago
• nf-core / test-datasets
  Test data to be used for automated testing with the nf-core pipelines
  ☆150Updated this week
• seqeralabs / nextflow-tutorial
  Nextflow training material for introductory tutorial
  ☆107Updated 3 years ago
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆126Updated 9 months ago
• louiejtaylor / grabseqs
  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
  ☆109Updated 5 months ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆57Updated this week
• cancerit / BRASS
  Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.
  ☆57Updated last year
• compbiocore / VariantVisualization.jl
  Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
  ☆87Updated 2 years ago